Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22399 | 5' | -61 | NC_005056.1 | + | 9527 | 0.68 | 0.192673 |
Target: 5'- uGUGCagACCGGCGGCAUgugCACCgacuGGCuUCa -3' miRNA: 3'- uCGCG--UGGCCGCCGUA---GUGG----UCGcAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 16487 | 0.68 | 0.192673 |
Target: 5'- cAGCGCACgGGCGGUggCAUacgCGGUGg- -3' miRNA: 3'- -UCGCGUGgCCGCCGuaGUG---GUCGCag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 10024 | 0.69 | 0.182485 |
Target: 5'- cGGCGaCAgCGGCGGCAcaACCGGgGg- -3' miRNA: 3'- -UCGC-GUgGCCGCCGUagUGGUCgCag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 4939 | 0.69 | 0.168097 |
Target: 5'- cGCGUACCGcCGGCAggUUACCGauGCGUUu -3' miRNA: 3'- uCGCGUGGCcGCCGU--AGUGGU--CGCAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 6319 | 0.69 | 0.163531 |
Target: 5'- gAGCGCGCCgugugugcgauGGCGaccGCGUCGCUuuaugAGCGUUa -3' miRNA: 3'- -UCGCGUGG-----------CCGC---CGUAGUGG-----UCGCAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 4286 | 0.71 | 0.127227 |
Target: 5'- uGGUGuCACCGGCucCAUCGCCAGCa-- -3' miRNA: 3'- -UCGC-GUGGCCGccGUAGUGGUCGcag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 9000 | 0.71 | 0.12024 |
Target: 5'- aAGCGuCugCGGCaGaGUCAgCAGCGUCg -3' miRNA: 3'- -UCGC-GugGCCGcCgUAGUgGUCGCAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 17726 | 0.71 | 0.12024 |
Target: 5'- cAGCGUcCCGGCuugGGUuUCAUCAGCGUg -3' miRNA: 3'- -UCGCGuGGCCG---CCGuAGUGGUCGCAg -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 4367 | 0.71 | 0.116882 |
Target: 5'- cGGUGcCACCGGCGGUGUCggugguGCUGGCGa- -3' miRNA: 3'- -UCGC-GUGGCCGCCGUAG------UGGUCGCag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 7459 | 0.71 | 0.110427 |
Target: 5'- uGGCGUACCgcuGGCGGCGU-ACCGGCu-- -3' miRNA: 3'- -UCGCGUGG---CCGCCGUAgUGGUCGcag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 6775 | 0.72 | 0.101368 |
Target: 5'- aGGUGCuuGCCGGUGGUgaacccAUCACCccGCGUCu -3' miRNA: 3'- -UCGCG--UGGCCGCCG------UAGUGGu-CGCAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 18825 | 0.72 | 0.093012 |
Target: 5'- uGUGCACCGGCuGCAUCAUCcgccgaGGCGg- -3' miRNA: 3'- uCGCGUGGCCGcCGUAGUGG------UCGCag -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 20 | 0.73 | 0.080521 |
Target: 5'- uGCGCGCUGGCGGUggugcugauuuuAUUuuuUCAGCGUCu -3' miRNA: 3'- uCGCGUGGCCGCCG------------UAGu--GGUCGCAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 5487 | 0.74 | 0.067642 |
Target: 5'- cAGCGCACCGGCaaUAUCGCCGGUaUCc -3' miRNA: 3'- -UCGCGUGGCCGccGUAGUGGUCGcAG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 19643 | 0.78 | 0.035301 |
Target: 5'- uGGCGCACUGGCgcugacuGGCGUCAUCGGUGcCa -3' miRNA: 3'- -UCGCGUGGCCG-------CCGUAGUGGUCGCaG- -5' |
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22399 | 5' | -61 | NC_005056.1 | + | 5744 | 1.01 | 0.000481 |
Target: 5'- cAGCGC-CCGGCGGCAUCACCAGCGUCa -3' miRNA: 3'- -UCGCGuGGCCGCCGUAGUGGUCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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