miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2240 5' -65.9 NC_001405.1 + 11544 0.66 0.174231
Target:  5'- cGUaCGCGguUACCaGGUCgGCGGCCGc -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGgCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 15975 0.66 0.169688
Target:  5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3'
miRNA:   3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 3794 0.66 0.169688
Target:  5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3'
miRNA:   3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5'
2240 5' -65.9 NC_001405.1 + 26857 0.66 0.16924
Target:  5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3'
miRNA:   3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5'
2240 5' -65.9 NC_001405.1 + 6446 0.66 0.165252
Target:  5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3'
miRNA:   3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5'
2240 5' -65.9 NC_001405.1 + 24629 0.66 0.160919
Target:  5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3'
miRNA:   3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5'
2240 5' -65.9 NC_001405.1 + 16077 0.66 0.160919
Target:  5'- cGCCGC-CACcaguguCCaCAGUggaCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGu-----GG-GUCGg--GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 6625 0.66 0.15669
Target:  5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3'
miRNA:   3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5'
2240 5' -65.9 NC_001405.1 + 5398 0.66 0.15669
Target:  5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3'
miRNA:   3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 23234 0.66 0.156273
Target:  5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3'
miRNA:   3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5'
2240 5' -65.9 NC_001405.1 + 6389 0.66 0.152561
Target:  5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3'
miRNA:   3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 12019 0.66 0.152561
Target:  5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3'
miRNA:   3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5'
2240 5' -65.9 NC_001405.1 + 13897 0.66 0.148531
Target:  5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3'
miRNA:   3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5'
2240 5' -65.9 NC_001405.1 + 21639 0.67 0.133365
Target:  5'- gGuCCGUGUGCACCagccGCaCCGCGGCg- -3'
miRNA:   3'- aC-GGCGCGUGUGGgu--CG-GGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 16421 0.67 0.133365
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
2240 5' -65.9 NC_001405.1 + 17330 0.67 0.133365
Target:  5'- gGCCGCaGCGgcCGCCU-GCaCCGCGGCa- -3'
miRNA:   3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 8715 0.67 0.129803
Target:  5'- -uCCGCGCGCAgcaccagcUCCuGCCCGCGcGCg- -3'
miRNA:   3'- acGGCGCGUGU--------GGGuCGGGCGC-CGgu -5'
2240 5' -65.9 NC_001405.1 + 8563 0.67 0.129803
Target:  5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3'
miRNA:   3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 17838 0.67 0.129803
Target:  5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3'
miRNA:   3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 17204 0.67 0.126329
Target:  5'- gGUC-UGCACGCCCAGuCCCG-GuGCCAc -3'
miRNA:   3'- aCGGcGCGUGUGGGUC-GGGCgC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.