miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22404 3' -59 NC_005056.1 + 11867 0.66 0.391817
Target:  5'- -aACCGUUAUCACCAcuGCCGgUGCa -3'
miRNA:   3'- ggUGGUAGUGGUGGUcuCGGCgGCGg -5'
22404 3' -59 NC_005056.1 + 11959 0.69 0.238482
Target:  5'- uCCGCCcUCcCgGCgCGGuuGCCGCUGCCa -3'
miRNA:   3'- -GGUGGuAGuGgUG-GUCu-CGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 12701 0.68 0.285597
Target:  5'- gCCGCgAUUGCCGCCcuuguAGAcUCGUCGCCu -3'
miRNA:   3'- -GGUGgUAGUGGUGG-----UCUcGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 12813 0.69 0.251241
Target:  5'- ----gGUCAUUGcCCAGcGCCGCCGCCa -3'
miRNA:   3'- gguggUAGUGGU-GGUCuCGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 14190 0.66 0.373015
Target:  5'- gCACCAUC-CUuaaacauccauuuACCAGAGUCaucaGCaCGCCg -3'
miRNA:   3'- gGUGGUAGuGG-------------UGGUCUCGG----CG-GCGG- -5'
22404 3' -59 NC_005056.1 + 16418 0.7 0.21459
Target:  5'- gUACCAcCGCCACCGcGuauGCCaCCGCCc -3'
miRNA:   3'- gGUGGUaGUGGUGGU-Cu--CGGcGGCGG- -5'
22404 3' -59 NC_005056.1 + 16688 0.67 0.331583
Target:  5'- aCACCcgCACCGCgCAGGuGCUgGCCGaCa -3'
miRNA:   3'- gGUGGuaGUGGUG-GUCU-CGG-CGGCgG- -5'
22404 3' -59 NC_005056.1 + 18664 0.68 0.271428
Target:  5'- aCACCG--GCCAUCGuucCCGCCGCCg -3'
miRNA:   3'- gGUGGUagUGGUGGUcucGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 18906 0.67 0.339757
Target:  5'- uUCGCCAgUGCCauauucagcgugACCGGcGuuGCCGCCu -3'
miRNA:   3'- -GGUGGUaGUGG------------UGGUCuCggCGGCGG- -5'
22404 3' -59 NC_005056.1 + 19688 0.68 0.285597
Target:  5'- gCGCCAgugCGCCACCGacaauGAgGCCGaugguugaCGCCa -3'
miRNA:   3'- gGUGGUa--GUGGUGGU-----CU-CGGCg-------GCGG- -5'
22404 3' -59 NC_005056.1 + 19821 0.7 0.220364
Target:  5'- gCCGCCAUUGUCGCCGGGG-CGuuGCUu -3'
miRNA:   3'- -GGUGGUAGUGGUGGUCUCgGCggCGG- -5'
22404 3' -59 NC_005056.1 + 20709 0.67 0.353986
Target:  5'- gCAUCGUCAgcuucCCGCCGGucaguucgggauaaAGCaCGCCgGCCa -3'
miRNA:   3'- gGUGGUAGU-----GGUGGUC--------------UCG-GCGG-CGG- -5'
22404 3' -59 NC_005056.1 + 21212 0.66 0.365147
Target:  5'- uUCACCGUUGaugagguugaaCACCGGGGCgCGCCGg- -3'
miRNA:   3'- -GGUGGUAGUg----------GUGGUCUCG-GCGGCgg -5'
22404 3' -59 NC_005056.1 + 21573 0.66 0.391817
Target:  5'- -gGCCGUCACCcCCu--GCC-CCGCUu -3'
miRNA:   3'- ggUGGUAGUGGuGGucuCGGcGGCGG- -5'
22404 3' -59 NC_005056.1 + 27112 0.78 0.055399
Target:  5'- aCACCAUCGCCGgUAuuGAGCguuaCGCCGCCg -3'
miRNA:   3'- gGUGGUAGUGGUgGU--CUCG----GCGGCGG- -5'
22404 3' -59 NC_005056.1 + 28196 0.71 0.177723
Target:  5'- aCACCGUCAUCaACCAGAuuaagcacuGCUGCgGCg -3'
miRNA:   3'- gGUGGUAGUGG-UGGUCU---------CGGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.