miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22404 3' -59 NC_005056.1 + 6329 0.7 0.225672
Target:  5'- uUCACCGUCGaugucguCCGCCGGAa-CGuCCGCCa -3'
miRNA:   3'- -GGUGGUAGU-------GGUGGUCUcgGC-GGCGG- -5'
22404 3' -59 NC_005056.1 + 28196 0.71 0.177723
Target:  5'- aCACCGUCAUCaACCAGAuuaagcacuGCUGCgGCg -3'
miRNA:   3'- gGUGGUAGUGG-UGGUCU---------CGGCGgCGg -5'
22404 3' -59 NC_005056.1 + 4029 0.71 0.17294
Target:  5'- gUCACCGcCACCGCCGGuGGCUuuGCUGCg -3'
miRNA:   3'- -GGUGGUaGUGGUGGUC-UCGG--CGGCGg -5'
22404 3' -59 NC_005056.1 + 7681 0.76 0.08561
Target:  5'- aCCACCGgcaACCACaCAGAuaaCCGUCGCCa -3'
miRNA:   3'- -GGUGGUag-UGGUG-GUCUc--GGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 10211 0.68 0.278441
Target:  5'- aCgACgCAUCACC-CguGAGCCGaCCGgCg -3'
miRNA:   3'- -GgUG-GUAGUGGuGguCUCGGC-GGCgG- -5'
22404 3' -59 NC_005056.1 + 19688 0.68 0.285597
Target:  5'- gCGCCAgugCGCCACCGacaauGAgGCCGaugguugaCGCCa -3'
miRNA:   3'- gGUGGUa--GUGGUGGU-----CU-CGGCg-------GCGG- -5'
22404 3' -59 NC_005056.1 + 1397 0.67 0.331583
Target:  5'- aCGCag-CGCCACCuauGAgGCCaGCCGCa -3'
miRNA:   3'- gGUGguaGUGGUGGu--CU-CGG-CGGCGg -5'
22404 3' -59 NC_005056.1 + 5618 0.66 0.400062
Target:  5'- uCCACagacUCACCGgCAGcgugggcgcgcauGGCCGCaagCGCCa -3'
miRNA:   3'- -GGUGgu--AGUGGUgGUC-------------UCGGCG---GCGG- -5'
22404 3' -59 NC_005056.1 + 21573 0.66 0.391817
Target:  5'- -gGCCGUCACCcCCu--GCC-CCGCUu -3'
miRNA:   3'- ggUGGUAGUGGuGGucuCGGcGGCGG- -5'
22404 3' -59 NC_005056.1 + 10031 0.66 0.382787
Target:  5'- uUACCGuuugaugagaguUCACCGCCGGuaugcgcgauGuuGCCGCg -3'
miRNA:   3'- gGUGGU------------AGUGGUGGUCu---------CggCGGCGg -5'
22404 3' -59 NC_005056.1 + 14190 0.66 0.373015
Target:  5'- gCACCAUC-CUuaaacauccauuuACCAGAGUCaucaGCaCGCCg -3'
miRNA:   3'- gGUGGUAGuGG-------------UGGUCUCGG----CG-GCGG- -5'
22404 3' -59 NC_005056.1 + 20709 0.67 0.353986
Target:  5'- gCAUCGUCAgcuucCCGCCGGucaguucgggauaaAGCaCGCCgGCCa -3'
miRNA:   3'- gGUGGUAGU-----GGUGGUC--------------UCG-GCGG-CGG- -5'
22404 3' -59 NC_005056.1 + 5977 0.67 0.348076
Target:  5'- uUCACCcUCACUgACCGGcguGCCGCC-CUg -3'
miRNA:   3'- -GGUGGuAGUGG-UGGUCu--CGGCGGcGG- -5'
22404 3' -59 NC_005056.1 + 1311 0.67 0.339757
Target:  5'- -aGCCAcUCACCGCCGGuaucAGCaCaCCGCUg -3'
miRNA:   3'- ggUGGU-AGUGGUGGUC----UCG-GcGGCGG- -5'
22404 3' -59 NC_005056.1 + 18906 0.67 0.339757
Target:  5'- uUCGCCAgUGCCauauucagcgugACCGGcGuuGCCGCCu -3'
miRNA:   3'- -GGUGGUaGUGG------------UGGUCuCggCGGCGG- -5'
22404 3' -59 NC_005056.1 + 7826 1.12 0.000143
Target:  5'- gCCACCAUCACCACCAGAGCCGCCGCCc -3'
miRNA:   3'- -GGUGGUAGUGGUGGUCUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.