Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22404 | 3' | -59 | NC_005056.1 | + | 8836 | 0.77 | 0.062259 |
Target: 5'- -aACCccCGCCGCCGGAGCCGgucacCCGCCc -3' miRNA: 3'- ggUGGuaGUGGUGGUCUCGGC-----GGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 11333 | 0.75 | 0.090672 |
Target: 5'- aCCGgcUCAUCACCGCUuGaAGuuGCCGCCg -3' miRNA: 3'- -GGU--GGUAGUGGUGGuC-UCggCGGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 4311 | 0.71 | 0.17294 |
Target: 5'- aCCACCGaCACCGCCGGuGGCaccgaGCgucaGCCg -3' miRNA: 3'- -GGUGGUaGUGGUGGUC-UCGg----CGg---CGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 1693 | 0.7 | 0.21459 |
Target: 5'- aCCACCGgcggUGCCAguaccacgcauCCGGcGCUGUCGCCa -3' miRNA: 3'- -GGUGGUa---GUGGU-----------GGUCuCGGCGGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 5898 | 0.7 | 0.21459 |
Target: 5'- -aACCGaaugCGCCccgcGCCAGGGCgGCaCGCCg -3' miRNA: 3'- ggUGGUa---GUGG----UGGUCUCGgCG-GCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 16418 | 0.7 | 0.21459 |
Target: 5'- gUACCAcCGCCACCGcGuauGCCaCCGCCc -3' miRNA: 3'- gGUGGUaGUGGUGGU-Cu--CGGcGGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 19821 | 0.7 | 0.220364 |
Target: 5'- gCCGCCAUUGUCGCCGGGG-CGuuGCUu -3' miRNA: 3'- -GGUGGUAGUGGUGGUCUCgGCggCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 12701 | 0.68 | 0.285597 |
Target: 5'- gCCGCgAUUGCCGCCcuuguAGAcUCGUCGCCu -3' miRNA: 3'- -GGUGgUAGUGGUGG-----UCUcGGCGGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 8955 | 0.67 | 0.315672 |
Target: 5'- aUCGCUGUCACCGUCAGGGC-GUCGgCg -3' miRNA: 3'- -GGUGGUAGUGGUGGUCUCGgCGGCgG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 7662 | 0.67 | 0.32276 |
Target: 5'- gCCACUgaguaugugcuggAaCGCUacggGCgGGAGCUGCCGCCu -3' miRNA: 3'- -GGUGG-------------UaGUGG----UGgUCUCGGCGGCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 16688 | 0.67 | 0.331583 |
Target: 5'- aCACCcgCACCGCgCAGGuGCUgGCCGaCa -3' miRNA: 3'- gGUGGuaGUGGUG-GUCU-CGG-CGGCgG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 5787 | 0.66 | 0.365147 |
Target: 5'- -aGCUGaaACCgaaGCCGGAGCCGCaGCCc -3' miRNA: 3'- ggUGGUagUGG---UGGUCUCGGCGgCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 21212 | 0.66 | 0.365147 |
Target: 5'- uUCACCGUUGaugagguugaaCACCGGGGCgCGCCGg- -3' miRNA: 3'- -GGUGGUAGUg----------GUGGUCUCG-GCGGCgg -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 8247 | 0.66 | 0.373896 |
Target: 5'- gCGCCggUugCACCAGcGCC-CgGCCu -3' miRNA: 3'- gGUGGuaGugGUGGUCuCGGcGgCGG- -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 11867 | 0.66 | 0.391817 |
Target: 5'- -aACCGUUAUCACCAcuGCCGgUGCa -3' miRNA: 3'- ggUGGUAGUGGUGGUcuCGGCgGCGg -5' |
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22404 | 3' | -59 | NC_005056.1 | + | 27112 | 0.78 | 0.055399 |
Target: 5'- aCACCAUCGCCGgUAuuGAGCguuaCGCCGCCg -3' miRNA: 3'- gGUGGUAGUGGUgGU--CUCG----GCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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