miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22404 5' -52 NC_005056.1 + 20725 0.66 0.730189
Target:  5'- gAUGGCACCGGCaUGauuu----ACGGCa -3'
miRNA:   3'- -UGCCGUGGCCG-ACguuuuuguUGCUG- -5'
22404 5' -52 NC_005056.1 + 26250 0.66 0.72678
Target:  5'- -aGGCACCGGUaaggcguuuaccggUGCuuauGCAugGAa -3'
miRNA:   3'- ugCCGUGGCCG--------------ACGuuuuUGUugCUg -5'
22404 5' -52 NC_005056.1 + 11925 0.66 0.718788
Target:  5'- uACuGCACCGGCaGUGGuGAUAACGGu -3'
miRNA:   3'- -UGcCGUGGCCGaCGUUuUUGUUGCUg -5'
22404 5' -52 NC_005056.1 + 22262 0.66 0.695706
Target:  5'- uGCGGCauGCUGGCauaAAGGACAAUGAa -3'
miRNA:   3'- -UGCCG--UGGCCGacgUUUUUGUUGCUg -5'
22404 5' -52 NC_005056.1 + 12758 0.67 0.67234
Target:  5'- cUGGCGgCGGC-GCu-GGGCAAUGACc -3'
miRNA:   3'- uGCCGUgGCCGaCGuuUUUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 8243 0.67 0.660585
Target:  5'- cUGuGCGCCGGUUGCAccAGCGccCGGCc -3'
miRNA:   3'- uGC-CGUGGCCGACGUuuUUGUu-GCUG- -5'
22404 5' -52 NC_005056.1 + 14415 0.67 0.648799
Target:  5'- uGCGGCAuuuCCGGCcauucaggauuUGCAGGAuccAC-ACGGCu -3'
miRNA:   3'- -UGCCGU---GGCCG-----------ACGUUUU---UGuUGCUG- -5'
22404 5' -52 NC_005056.1 + 17493 0.67 0.648799
Target:  5'- aACGGCgucgACCGGCUG---GAGCAACa-- -3'
miRNA:   3'- -UGCCG----UGGCCGACguuUUUGUUGcug -5'
22404 5' -52 NC_005056.1 + 17989 0.67 0.636996
Target:  5'- -aGGCGcuCCGGCgaaGCGGAAACA-CGAa -3'
miRNA:   3'- ugCCGU--GGCCGa--CGUUUUUGUuGCUg -5'
22404 5' -52 NC_005056.1 + 22423 0.68 0.625188
Target:  5'- gACGGCAaCGGgUGCGGccuuacGGCGugGACu -3'
miRNA:   3'- -UGCCGUgGCCgACGUUu-----UUGUugCUG- -5'
22404 5' -52 NC_005056.1 + 7453 0.68 0.625188
Target:  5'- cCGuaACCGGCacccgGCAGGGACGcccagauauuGCGACa -3'
miRNA:   3'- uGCcgUGGCCGa----CGUUUUUGU----------UGCUG- -5'
22404 5' -52 NC_005056.1 + 9439 0.68 0.613387
Target:  5'- -gGGUcauACCGGCgGCAAuguGACGAUGAg -3'
miRNA:   3'- ugCCG---UGGCCGaCGUUu--UUGUUGCUg -5'
22404 5' -52 NC_005056.1 + 27632 0.68 0.601604
Target:  5'- cACuGCAgCGGCUGUuaccGCAugGGCg -3'
miRNA:   3'- -UGcCGUgGCCGACGuuuuUGUugCUG- -5'
22404 5' -52 NC_005056.1 + 20222 0.68 0.57814
Target:  5'- uAUGGCACCGGUgGUuauauucCGGCGACc -3'
miRNA:   3'- -UGCCGUGGCCGaCGuuuuu--GUUGCUG- -5'
22404 5' -52 NC_005056.1 + 16097 0.69 0.531905
Target:  5'- aACGGUgACCGGUUuugacuggucgGCGAuagccuGCAACGACg -3'
miRNA:   3'- -UGCCG-UGGCCGA-----------CGUUuu----UGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 11144 0.69 0.520544
Target:  5'- cACaGCACCGGCUGgG---GC-GCGACa -3'
miRNA:   3'- -UGcCGUGGCCGACgUuuuUGuUGCUG- -5'
22404 5' -52 NC_005056.1 + 7749 0.7 0.476137
Target:  5'- cCGGUGCCguGGC-GCAGAcgGGCGGCGGCu -3'
miRNA:   3'- uGCCGUGG--CCGaCGUUU--UUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 18601 0.7 0.454648
Target:  5'- -gGGaUugCGGCgGCGGGAACGAUGGCc -3'
miRNA:   3'- ugCC-GugGCCGaCGUUUUUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 9585 0.71 0.403345
Target:  5'- uCGGUgcacaugccGCCGGuCUGCAcacGGCAGCGACc -3'
miRNA:   3'- uGCCG---------UGGCC-GACGUuu-UUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 18826 0.73 0.338879
Target:  5'- cUGuGCACCGGCUGCAucauccgccgaGGCGGCa -3'
miRNA:   3'- uGC-CGUGGCCGACGUuuuug------UUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.