miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 6709 1.1 0.000333
Target:  5'- gCGCGCUCGGGCAUGAACGCCGGCAGCc -3'
miRNA:   3'- -GCGCGAGCCCGUACUUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4953 0.83 0.035331
Target:  5'- gGUGCUCGGGUAuUGAACccguCCGGCAGCa -3'
miRNA:   3'- gCGCGAGCCCGU-ACUUGc---GGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 12977 0.77 0.094202
Target:  5'- gGCGCUCGGGUAcuaGAAUuCgCGGCAGCa -3'
miRNA:   3'- gCGCGAGCCCGUa--CUUGcG-GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 16603 0.76 0.120445
Target:  5'- cCG-GCUCGGGUAUccccGaAGCGCCGGCAGa -3'
miRNA:   3'- -GCgCGAGCCCGUA----C-UUGCGGCCGUCg -5'
22561 5' -59.8 NC_005091.1 + 16345 0.75 0.123416
Target:  5'- aCGUGCUCGGcGCGUucgucgcGAGCggcgcaucgcauGCCGGCGGCc -3'
miRNA:   3'- -GCGCGAGCC-CGUA-------CUUG------------CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 40643 0.74 0.161706
Target:  5'- cCGUGCUCGGcGCggGAuaccgacuCGgCGGCGGCg -3'
miRNA:   3'- -GCGCGAGCC-CGuaCUu-------GCgGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 26110 0.73 0.170461
Target:  5'- uCGCGCUCGccacGGCGU--ACGUCGGCGuGCa -3'
miRNA:   3'- -GCGCGAGC----CCGUAcuUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 35629 0.73 0.179168
Target:  5'- uGCGCUCGgccGGCuUGAaguggugACGcCCGGUAGCg -3'
miRNA:   3'- gCGCGAGC---CCGuACU-------UGC-GGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4669 0.72 0.209834
Target:  5'- cCGCGCgucguuUUGGGCcgGGGCcgucGCUGGUAGCu -3'
miRNA:   3'- -GCGCG------AGCCCGuaCUUG----CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 46009 0.71 0.25049
Target:  5'- aGCGCUCGcGCAcc-GCGCCGgaacGCAGCg -3'
miRNA:   3'- gCGCGAGCcCGUacuUGCGGC----CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 25687 0.71 0.25049
Target:  5'- uCGCGCUUuucgcgaaGGGCAUGAACaucagucuGCCGGaauugaacaAGCg -3'
miRNA:   3'- -GCGCGAG--------CCCGUACUUG--------CGGCCg--------UCG- -5'
22561 5' -59.8 NC_005091.1 + 34055 0.71 0.263244
Target:  5'- aCGCGCUgaaGGCGU--ACGUCGGCGGUg -3'
miRNA:   3'- -GCGCGAgc-CCGUAcuUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 47867 0.7 0.27652
Target:  5'- aCGCuGUUCGG-CAgu-ACGCCGGguGCg -3'
miRNA:   3'- -GCG-CGAGCCcGUacuUGCGGCCguCG- -5'
22561 5' -59.8 NC_005091.1 + 44635 0.7 0.27652
Target:  5'- gGCGCUcgaagaagacgCGGGCGgcgacGAAgGCgaCGGCAGCg -3'
miRNA:   3'- gCGCGA-----------GCCCGUa----CUUgCG--GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 9286 0.7 0.283356
Target:  5'- cCGCGCgauUCGGGU-----CGCCGGCuGCa -3'
miRNA:   3'- -GCGCG---AGCCCGuacuuGCGGCCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 44042 0.7 0.283356
Target:  5'- cCGCGCcaagGaGGCAcgaUGGACGUgGGCGGCu -3'
miRNA:   3'- -GCGCGag--C-CCGU---ACUUGCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 33951 0.7 0.290325
Target:  5'- -aCGC-CGGGCG---GCGUCGGUAGCg -3'
miRNA:   3'- gcGCGaGCCCGUacuUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 25118 0.7 0.297428
Target:  5'- aCGCGC-CGGcuGCAUcGACGCCcgguGCAGCg -3'
miRNA:   3'- -GCGCGaGCC--CGUAcUUGCGGc---CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 810 0.7 0.304665
Target:  5'- uGCGCUgCGcugccGCGUGggUGUaCGGCGGCg -3'
miRNA:   3'- gCGCGA-GCc----CGUACuuGCG-GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 42419 0.69 0.312036
Target:  5'- aGCGCUCgccgaGGGCuacGACGacaaCGGCGGCc -3'
miRNA:   3'- gCGCGAG-----CCCGuacUUGCg---GCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.