miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 46009 0.71 0.25049
Target:  5'- aGCGCUCGcGCAcc-GCGCCGgaacGCAGCg -3'
miRNA:   3'- gCGCGAGCcCGUacuUGCGGC----CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 12092 0.66 0.513699
Target:  5'- aCGCGCgagcCGGGCcugcuugaugaugcgGAACgGCaCGGCgAGCa -3'
miRNA:   3'- -GCGCGa---GCCCGua-------------CUUG-CG-GCCG-UCG- -5'
22561 5' -59.8 NC_005091.1 + 22177 0.66 0.506625
Target:  5'- cCGCGCagGucGGCAUuu-UGCUGGCGGCc -3'
miRNA:   3'- -GCGCGagC--CCGUAcuuGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4821 0.66 0.506625
Target:  5'- uCGCGCUCGGcGCGgcGGCaaCGGUcaAGCg -3'
miRNA:   3'- -GCGCGAGCC-CGUacUUGcgGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 51617 0.66 0.506625
Target:  5'- gGCGCgauucGGCAUGAuAUGCCGaaugaaGCGGCu -3'
miRNA:   3'- gCGCGagc--CCGUACU-UGCGGC------CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 22778 0.66 0.496592
Target:  5'- uGCGCUCGGcaucgaucacgaGCAcGGACGuuucgaagaaCCGGCgcGGCg -3'
miRNA:   3'- gCGCGAGCC------------CGUaCUUGC----------GGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 19545 0.67 0.447875
Target:  5'- uGCGCuuUCGGGCc-GAGCGCCGccgaCAGa -3'
miRNA:   3'- gCGCG--AGCCCGuaCUUGCGGCc---GUCg -5'
22561 5' -59.8 NC_005091.1 + 55807 0.67 0.444092
Target:  5'- gCGCcgacuGCUCGGGCAaguacgcgacgaaGAGCggcgcaGCCGGuCAGCa -3'
miRNA:   3'- -GCG-----CGAGCCCGUa------------CUUG------CGGCC-GUCG- -5'
22561 5' -59.8 NC_005091.1 + 29476 0.67 0.419949
Target:  5'- gGCGaacCGGGCGagcgacguaGGACGCUGGCGcGCg -3'
miRNA:   3'- gCGCga-GCCCGUa--------CUUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 49821 0.67 0.410876
Target:  5'- cCGCGUUCGuGGCGgcuugcgcguUGAGCGC-GGCAcucaggGCa -3'
miRNA:   3'- -GCGCGAGC-CCGU----------ACUUGCGgCCGU------CG- -5'
22561 5' -59.8 NC_005091.1 + 53172 0.68 0.393102
Target:  5'- aGCGCgCGGGCGcGAGCcuuCCGGU-GCa -3'
miRNA:   3'- gCGCGaGCCCGUaCUUGc--GGCCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 31452 0.68 0.392226
Target:  5'- aGCGC-CGGGCcgGAcugaaucACGCCaGCAa- -3'
miRNA:   3'- gCGCGaGCCCGuaCU-------UGCGGcCGUcg -5'
22561 5' -59.8 NC_005091.1 + 25624 0.68 0.375834
Target:  5'- aGCGCgaaugcggCGGGCAgccGAuCGCCGaGCuGGCc -3'
miRNA:   3'- gCGCGa-------GCCCGUa--CUuGCGGC-CG-UCG- -5'
22561 5' -59.8 NC_005091.1 + 54944 0.69 0.342867
Target:  5'- aCGCGCUCGc-CA--AGCGCCGcGCGGCu -3'
miRNA:   3'- -GCGCGAGCccGUacUUGCGGC-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 10123 0.69 0.334958
Target:  5'- gCGCGCgagaCGGaCGUu-ACGCCGGCAcGCg -3'
miRNA:   3'- -GCGCGa---GCCcGUAcuUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 32324 0.69 0.322582
Target:  5'- gGCGCUCGcGGUcgGccuugauagcagcacGGCGuUCGGCGGCc -3'
miRNA:   3'- gCGCGAGC-CCGuaC---------------UUGC-GGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 810 0.7 0.304665
Target:  5'- uGCGCUgCGcugccGCGUGggUGUaCGGCGGCg -3'
miRNA:   3'- gCGCGA-GCc----CGUACuuGCG-GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 25118 0.7 0.297428
Target:  5'- aCGCGC-CGGcuGCAUcGACGCCcgguGCAGCg -3'
miRNA:   3'- -GCGCGaGCC--CGUAcUUGCGGc---CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 47867 0.7 0.27652
Target:  5'- aCGCuGUUCGG-CAgu-ACGCCGGguGCg -3'
miRNA:   3'- -GCG-CGAGCCcGUacuUGCGGCCguCG- -5'
22561 5' -59.8 NC_005091.1 + 4669 0.72 0.209834
Target:  5'- cCGCGCgucguuUUGGGCcgGGGCcgucGCUGGUAGCu -3'
miRNA:   3'- -GCGCG------AGCCCGuaCUUG----CGGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.