miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 20144 0.66 0.515727
Target:  5'- aCGCGCagaucgUCGGGCAgcaGAUGUCGaugacguucaagcGCGGCg -3'
miRNA:   3'- -GCGCG------AGCCCGUac-UUGCGGC-------------CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 53657 0.69 0.342867
Target:  5'- gCGCGC-CGGGguU--GCGCUGGCAaugguGCg -3'
miRNA:   3'- -GCGCGaGCCCguAcuUGCGGCCGU-----CG- -5'
22561 5' -59.8 NC_005091.1 + 22956 0.69 0.34048
Target:  5'- aGCGCUCgaauGGGCGacGAGCGUgcagcaaucgaauaUGGCGGCc -3'
miRNA:   3'- gCGCGAG----CCCGUa-CUUGCG--------------GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 6709 1.1 0.000333
Target:  5'- gCGCGCUCGGGCAUGAACGCCGGCAGCc -3'
miRNA:   3'- -GCGCGAGCCCGUACUUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 56098 0.66 0.496592
Target:  5'- aGCGC--GGGCG-GGAgGUCGGcCGGCg -3'
miRNA:   3'- gCGCGagCCCGUaCUUgCGGCC-GUCG- -5'
22561 5' -59.8 NC_005091.1 + 42723 0.66 0.486649
Target:  5'- aCGCG-UCGGGCAaGGACGaauacgaaGGCuGCu -3'
miRNA:   3'- -GCGCgAGCCCGUaCUUGCgg------CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 927 0.67 0.460293
Target:  5'- aGCGC-CGGGUAUuucauggccgcagGAuCGCCgccguacacccacgcGGCAGCg -3'
miRNA:   3'- gCGCGaGCCCGUA-------------CUuGCGG---------------CCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 26438 0.67 0.457411
Target:  5'- cCGCGCgCGGGCcgccgGGGCuGCCaucGUAGCg -3'
miRNA:   3'- -GCGCGaGCCCGua---CUUG-CGGc--CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 32565 0.67 0.447875
Target:  5'- uGCGCugaaccUCGGGC-UGAuugACGC-GGUGGCa -3'
miRNA:   3'- gCGCG------AGCCCGuACU---UGCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 1104 0.69 0.35091
Target:  5'- uCGCGUUCcgucGUAUuGACGCCGaGCAGCg -3'
miRNA:   3'- -GCGCGAGcc--CGUAcUUGCGGC-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 28382 0.68 0.393102
Target:  5'- uCGCGCUCuGGUu----CaCCGGCAGCa -3'
miRNA:   3'- -GCGCGAGcCCGuacuuGcGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 45814 0.67 0.447875
Target:  5'- aCG-GCUCGGuGCAUcggaaGAGCaguaGCCGGCgcGGCg -3'
miRNA:   3'- -GCgCGAGCC-CGUA-----CUUG----CGGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 1485 0.66 0.496592
Target:  5'- gGCGCUC-GGCAUGc-CGCCcaucGGC-GCg -3'
miRNA:   3'- gCGCGAGcCCGUACuuGCGG----CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 10220 0.68 0.367394
Target:  5'- gGCGCUCGGcGCGU----GCCGGCGu- -3'
miRNA:   3'- gCGCGAGCC-CGUAcuugCGGCCGUcg -5'
22561 5' -59.8 NC_005091.1 + 4455 0.66 0.496592
Target:  5'- uCGUGCaUCGGGaa-GGugGCauGCAGCu -3'
miRNA:   3'- -GCGCG-AGCCCguaCUugCGgcCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 3326 0.67 0.457411
Target:  5'- uGCGC--GGGUugaagucaucgAUcGAGCgGCCGGCGGCg -3'
miRNA:   3'- gCGCGagCCCG-----------UA-CUUG-CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 22840 0.68 0.359086
Target:  5'- aGCGCaCGcGCcUGAACgccgcgcugacgGCCGGCGGCg -3'
miRNA:   3'- gCGCGaGCcCGuACUUG------------CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 33443 0.69 0.342867
Target:  5'- aGCGCUCGcucGGCGacGGACGCgacGCAGCa -3'
miRNA:   3'- gCGCGAGC---CCGUa-CUUGCGgc-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 32843 0.66 0.496592
Target:  5'- aCGCcCUCGGGa---GGgGCgGGCAGCa -3'
miRNA:   3'- -GCGcGAGCCCguacUUgCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 52720 0.66 0.486649
Target:  5'- uCG-GUUCGGGCAU---CGCUugGGCGGCu -3'
miRNA:   3'- -GCgCGAGCCCGUAcuuGCGG--CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.