miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 810 0.7 0.304665
Target:  5'- uGCGCUgCGcugccGCGUGggUGUaCGGCGGCg -3'
miRNA:   3'- gCGCGA-GCc----CGUACuuGCG-GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 927 0.67 0.460293
Target:  5'- aGCGC-CGGGUAUuucauggccgcagGAuCGCCgccguacacccacgcGGCAGCg -3'
miRNA:   3'- gCGCGaGCCCGUA-------------CUuGCGG---------------CCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 1104 0.69 0.35091
Target:  5'- uCGCGUUCcgucGUAUuGACGCCGaGCAGCg -3'
miRNA:   3'- -GCGCGAGcc--CGUAcUUGCGGC-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 1485 0.66 0.496592
Target:  5'- gGCGCUC-GGCAUGc-CGCCcaucGGC-GCg -3'
miRNA:   3'- gCGCGAGcCCGUACuuGCGG----CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 3326 0.67 0.457411
Target:  5'- uGCGC--GGGUugaagucaucgAUcGAGCgGCCGGCGGCg -3'
miRNA:   3'- gCGCGagCCCG-----------UA-CUUG-CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4455 0.66 0.496592
Target:  5'- uCGUGCaUCGGGaa-GGugGCauGCAGCu -3'
miRNA:   3'- -GCGCG-AGCCCguaCUugCGgcCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4669 0.72 0.209834
Target:  5'- cCGCGCgucguuUUGGGCcgGGGCcgucGCUGGUAGCu -3'
miRNA:   3'- -GCGCG------AGCCCGuaCUUG----CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4821 0.66 0.506625
Target:  5'- uCGCGCUCGGcGCGgcGGCaaCGGUcaAGCg -3'
miRNA:   3'- -GCGCGAGCC-CGUacUUGcgGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 4953 0.83 0.035331
Target:  5'- gGUGCUCGGGUAuUGAACccguCCGGCAGCa -3'
miRNA:   3'- gCGCGAGCCCGU-ACUUGc---GGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 6709 1.1 0.000333
Target:  5'- gCGCGCUCGGGCAUGAACGCCGGCAGCc -3'
miRNA:   3'- -GCGCGAGCCCGUACUUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 9286 0.7 0.283356
Target:  5'- cCGCGCgauUCGGGU-----CGCCGGCuGCa -3'
miRNA:   3'- -GCGCG---AGCCCGuacuuGCGGCCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 10123 0.69 0.334958
Target:  5'- gCGCGCgagaCGGaCGUu-ACGCCGGCAcGCg -3'
miRNA:   3'- -GCGCGa---GCCcGUAcuUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 10220 0.68 0.367394
Target:  5'- gGCGCUCGGcGCGU----GCCGGCGu- -3'
miRNA:   3'- gCGCGAGCC-CGUAcuugCGGCCGUcg -5'
22561 5' -59.8 NC_005091.1 + 12092 0.66 0.513699
Target:  5'- aCGCGCgagcCGGGCcugcuugaugaugcgGAACgGCaCGGCgAGCa -3'
miRNA:   3'- -GCGCGa---GCCCGua-------------CUUG-CG-GCCG-UCG- -5'
22561 5' -59.8 NC_005091.1 + 12977 0.77 0.094202
Target:  5'- gGCGCUCGGGUAcuaGAAUuCgCGGCAGCa -3'
miRNA:   3'- gCGCGAGCCCGUa--CUUGcG-GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 16345 0.75 0.123416
Target:  5'- aCGUGCUCGGcGCGUucgucgcGAGCggcgcaucgcauGCCGGCGGCc -3'
miRNA:   3'- -GCGCGAGCC-CGUA-------CUUG------------CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 16603 0.76 0.120445
Target:  5'- cCG-GCUCGGGUAUccccGaAGCGCCGGCAGa -3'
miRNA:   3'- -GCgCGAGCCCGUA----C-UUGCGGCCGUCg -5'
22561 5' -59.8 NC_005091.1 + 18180 0.67 0.429141
Target:  5'- cCGCaGCUCGGcaucgagaaCAUGAuccugcGCGCCGGCAa- -3'
miRNA:   3'- -GCG-CGAGCCc--------GUACU------UGCGGCCGUcg -5'
22561 5' -59.8 NC_005091.1 + 19545 0.67 0.447875
Target:  5'- uGCGCuuUCGGGCc-GAGCGCCGccgaCAGa -3'
miRNA:   3'- gCGCG--AGCCCGuaCUUGCGGCc---GUCg -5'
22561 5' -59.8 NC_005091.1 + 20144 0.66 0.515727
Target:  5'- aCGCGCagaucgUCGGGCAgcaGAUGUCGaugacguucaagcGCGGCg -3'
miRNA:   3'- -GCGCG------AGCCCGUac-UUGCGGC-------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.