miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 22177 0.66 0.506625
Target:  5'- cCGCGCagGucGGCAUuu-UGCUGGCGGCc -3'
miRNA:   3'- -GCGCGagC--CCGUAcuuGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 22778 0.66 0.496592
Target:  5'- uGCGCUCGGcaucgaucacgaGCAcGGACGuuucgaagaaCCGGCgcGGCg -3'
miRNA:   3'- gCGCGAGCC------------CGUaCUUGC----------GGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 22840 0.68 0.359086
Target:  5'- aGCGCaCGcGCcUGAACgccgcgcugacgGCCGGCGGCg -3'
miRNA:   3'- gCGCGaGCcCGuACUUG------------CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 22956 0.69 0.34048
Target:  5'- aGCGCUCgaauGGGCGacGAGCGUgcagcaaucgaauaUGGCGGCc -3'
miRNA:   3'- gCGCGAG----CCCGUa-CUUGCG--------------GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 25118 0.7 0.297428
Target:  5'- aCGCGC-CGGcuGCAUcGACGCCcgguGCAGCg -3'
miRNA:   3'- -GCGCGaGCC--CGUAcUUGCGGc---CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 25624 0.68 0.375834
Target:  5'- aGCGCgaaugcggCGGGCAgccGAuCGCCGaGCuGGCc -3'
miRNA:   3'- gCGCGa-------GCCCGUa--CUuGCGGC-CG-UCG- -5'
22561 5' -59.8 NC_005091.1 + 25687 0.71 0.25049
Target:  5'- uCGCGCUUuucgcgaaGGGCAUGAACaucagucuGCCGGaauugaacaAGCg -3'
miRNA:   3'- -GCGCGAG--------CCCGUACUUG--------CGGCCg--------UCG- -5'
22561 5' -59.8 NC_005091.1 + 26110 0.73 0.170461
Target:  5'- uCGCGCUCGccacGGCGU--ACGUCGGCGuGCa -3'
miRNA:   3'- -GCGCGAGC----CCGUAcuUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 26374 0.66 0.516743
Target:  5'- gCGCGCgguccugaCGGGCAUucAgGCggucugcugCGGCAGCc -3'
miRNA:   3'- -GCGCGa-------GCCCGUAcuUgCG---------GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 26438 0.67 0.457411
Target:  5'- cCGCGCgCGGGCcgccgGGGCuGCCaucGUAGCg -3'
miRNA:   3'- -GCGCGaGCCCGua---CUUG-CGGc--CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 28382 0.68 0.393102
Target:  5'- uCGCGCUCuGGUu----CaCCGGCAGCa -3'
miRNA:   3'- -GCGCGAGcCCGuacuuGcGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 29476 0.67 0.419949
Target:  5'- gGCGaacCGGGCGagcgacguaGGACGCUGGCGcGCg -3'
miRNA:   3'- gCGCga-GCCCGUa--------CUUGCGGCCGU-CG- -5'
22561 5' -59.8 NC_005091.1 + 31452 0.68 0.392226
Target:  5'- aGCGC-CGGGCcgGAcugaaucACGCCaGCAa- -3'
miRNA:   3'- gCGCGaGCCCGuaCU-------UGCGGcCGUcg -5'
22561 5' -59.8 NC_005091.1 + 32324 0.69 0.322582
Target:  5'- gGCGCUCGcGGUcgGccuugauagcagcacGGCGuUCGGCGGCc -3'
miRNA:   3'- gCGCGAGC-CCGuaC---------------UUGC-GGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 32565 0.67 0.447875
Target:  5'- uGCGCugaaccUCGGGC-UGAuugACGC-GGUGGCa -3'
miRNA:   3'- gCGCG------AGCCCGuACU---UGCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 32843 0.66 0.496592
Target:  5'- aCGCcCUCGGGa---GGgGCgGGCAGCa -3'
miRNA:   3'- -GCGcGAGCCCguacUUgCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 33443 0.69 0.342867
Target:  5'- aGCGCUCGcucGGCGacGGACGCgacGCAGCa -3'
miRNA:   3'- gCGCGAGC---CCGUa-CUUGCGgc-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 33951 0.7 0.290325
Target:  5'- -aCGC-CGGGCG---GCGUCGGUAGCg -3'
miRNA:   3'- gcGCGaGCCCGUacuUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 34055 0.71 0.263244
Target:  5'- aCGCGCUgaaGGCGU--ACGUCGGCGGUg -3'
miRNA:   3'- -GCGCGAgc-CCGUAcuUGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 35629 0.73 0.179168
Target:  5'- uGCGCUCGgccGGCuUGAaguggugACGcCCGGUAGCg -3'
miRNA:   3'- gCGCGAGC---CCGuACU-------UGC-GGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.