Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22561 | 5' | -59.8 | NC_005091.1 | + | 25624 | 0.68 | 0.375834 |
Target: 5'- aGCGCgaaugcggCGGGCAgccGAuCGCCGaGCuGGCc -3' miRNA: 3'- gCGCGa-------GCCCGUa--CUuGCGGC-CG-UCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 32565 | 0.67 | 0.447875 |
Target: 5'- uGCGCugaaccUCGGGC-UGAuugACGC-GGUGGCa -3' miRNA: 3'- gCGCG------AGCCCGuACU---UGCGgCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 18180 | 0.67 | 0.429141 |
Target: 5'- cCGCaGCUCGGcaucgagaaCAUGAuccugcGCGCCGGCAa- -3' miRNA: 3'- -GCG-CGAGCCc--------GUACU------UGCGGCCGUcg -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 28382 | 0.68 | 0.393102 |
Target: 5'- uCGCGCUCuGGUu----CaCCGGCAGCa -3' miRNA: 3'- -GCGCGAGcCCGuacuuGcGGCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 10220 | 0.68 | 0.367394 |
Target: 5'- gGCGCUCGGcGCGU----GCCGGCGu- -3' miRNA: 3'- gCGCGAGCC-CGUAcuugCGGCCGUcg -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 22840 | 0.68 | 0.359086 |
Target: 5'- aGCGCaCGcGCcUGAACgccgcgcugacgGCCGGCGGCg -3' miRNA: 3'- gCGCGaGCcCGuACUUG------------CGGCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 1104 | 0.69 | 0.35091 |
Target: 5'- uCGCGUUCcgucGUAUuGACGCCGaGCAGCg -3' miRNA: 3'- -GCGCGAGcc--CGUAcUUGCGGC-CGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 53657 | 0.69 | 0.342867 |
Target: 5'- gCGCGC-CGGGguU--GCGCUGGCAaugguGCg -3' miRNA: 3'- -GCGCGaGCCCguAcuUGCGGCCGU-----CG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 33443 | 0.69 | 0.342867 |
Target: 5'- aGCGCUCGcucGGCGacGGACGCgacGCAGCa -3' miRNA: 3'- gCGCGAGC---CCGUa-CUUGCGgc-CGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 45814 | 0.67 | 0.447875 |
Target: 5'- aCG-GCUCGGuGCAUcggaaGAGCaguaGCCGGCgcGGCg -3' miRNA: 3'- -GCgCGAGCC-CGUA-----CUUG----CGGCCG--UCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 3326 | 0.67 | 0.457411 |
Target: 5'- uGCGC--GGGUugaagucaucgAUcGAGCgGCCGGCGGCg -3' miRNA: 3'- gCGCGagCCCG-----------UA-CUUG-CGGCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 26438 | 0.67 | 0.457411 |
Target: 5'- cCGCGCgCGGGCcgccgGGGCuGCCaucGUAGCg -3' miRNA: 3'- -GCGCGaGCCCGua---CUUG-CGGc--CGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 6709 | 1.1 | 0.000333 |
Target: 5'- gCGCGCUCGGGCAUGAACGCCGGCAGCc -3' miRNA: 3'- -GCGCGAGCCCGUACUUGCGGCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 1485 | 0.66 | 0.496592 |
Target: 5'- gGCGCUC-GGCAUGc-CGCCcaucGGC-GCg -3' miRNA: 3'- gCGCGAGcCCGUACuuGCGG----CCGuCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 4455 | 0.66 | 0.496592 |
Target: 5'- uCGUGCaUCGGGaa-GGugGCauGCAGCu -3' miRNA: 3'- -GCGCG-AGCCCguaCUugCGgcCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 32843 | 0.66 | 0.496592 |
Target: 5'- aCGCcCUCGGGa---GGgGCgGGCAGCa -3' miRNA: 3'- -GCGcGAGCCCguacUUgCGgCCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 56098 | 0.66 | 0.496592 |
Target: 5'- aGCGC--GGGCG-GGAgGUCGGcCGGCg -3' miRNA: 3'- gCGCGagCCCGUaCUUgCGGCC-GUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 42723 | 0.66 | 0.486649 |
Target: 5'- aCGCG-UCGGGCAaGGACGaauacgaaGGCuGCu -3' miRNA: 3'- -GCGCgAGCCCGUaCUUGCgg------CCGuCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 52720 | 0.66 | 0.486649 |
Target: 5'- uCG-GUUCGGGCAU---CGCUugGGCGGCu -3' miRNA: 3'- -GCgCGAGCCCGUAcuuGCGG--CCGUCG- -5' |
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22561 | 5' | -59.8 | NC_005091.1 | + | 927 | 0.67 | 0.460293 |
Target: 5'- aGCGC-CGGGUAUuucauggccgcagGAuCGCCgccguacacccacgcGGCAGCg -3' miRNA: 3'- gCGCGaGCCCGUA-------------CUuGCGG---------------CCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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