Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22563 | 5' | -58.3 | NC_005091.1 | + | 4667 | 0.66 | 0.530396 |
Target: 5'- cUCCGC-GCGucguuuuggGCCGGgGCCGUCg -3' miRNA: 3'- aAGGCGaCGUuaa------CGGCUgCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 6610 | 0.66 | 0.519949 |
Target: 5'- cUCgCGCgGCGuccgggcUGCCGGCGUucaUGCCCg -3' miRNA: 3'- aAG-GCGaCGUua-----ACGGCUGCG---GCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 6719 | 0.71 | 0.281462 |
Target: 5'- cUUgGCUGCGGUcGCCGuCGCCaacaagaagcaGCCCg -3' miRNA: 3'- aAGgCGACGUUAaCGGCuGCGG-----------CGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 6954 | 0.69 | 0.367105 |
Target: 5'- cUUCCGCUGCGcgUGCgacggaGACaGCCauuucguacgGCCCc -3' miRNA: 3'- -AAGGCGACGUuaACGg-----CUG-CGG----------CGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 8333 | 1.1 | 0.000404 |
Target: 5'- aUUCCGCUGCAAUUGCCGACGCCGCCCa -3' miRNA: 3'- -AAGGCGACGUUAACGGCUGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 10219 | 0.69 | 0.375726 |
Target: 5'- --gCGCUcgGCGcgUGCCGGCGUaaCGUCCg -3' miRNA: 3'- aagGCGA--CGUuaACGGCUGCG--GCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 10467 | 0.67 | 0.459178 |
Target: 5'- gUCCGCUucgucgccgaagGCGGUauCCG-CGCCGUCCu -3' miRNA: 3'- aAGGCGA------------CGUUAacGGCuGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 11425 | 0.66 | 0.530396 |
Target: 5'- gUUUCGCgGCGGccacgucgGCCGACGCuuuCGCCUu -3' miRNA: 3'- -AAGGCGaCGUUaa------CGGCUGCG---GCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 11795 | 0.66 | 0.55151 |
Target: 5'- aUCUGUUGguAUcgGCCGcuCGCCGUCg -3' miRNA: 3'- aAGGCGACguUAa-CGGCu-GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 13961 | 0.7 | 0.303137 |
Target: 5'- -aCgGCUGCAuc-GUCGGCGCCGCa- -3' miRNA: 3'- aaGgCGACGUuaaCGGCUGCGGCGgg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 14246 | 0.69 | 0.375726 |
Target: 5'- -gCCGCcuUGCG--UGUCGuACGCCGaCCCg -3' miRNA: 3'- aaGGCG--ACGUuaACGGC-UGCGGC-GGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 14767 | 0.66 | 0.530396 |
Target: 5'- gUUCCuGUcagUGCGGUUGUCGGC-CCGgCCg -3' miRNA: 3'- -AAGG-CG---ACGUUAACGGCUGcGGCgGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 15313 | 0.72 | 0.248098 |
Target: 5'- cUUCCcCUGCGA-UGCCGAccaugugauCGCCuGCCCg -3' miRNA: 3'- -AAGGcGACGUUaACGGCU---------GCGG-CGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 15762 | 0.72 | 0.248098 |
Target: 5'- -aCCGCagcucgGCAAcacgcaUGCCGACGCC-CCCg -3' miRNA: 3'- aaGGCGa-----CGUUa-----ACGGCUGCGGcGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 18965 | 0.68 | 0.439766 |
Target: 5'- gUCCGC----GUUGCCuugaAUGCCGCCCu -3' miRNA: 3'- aAGGCGacguUAACGGc---UGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 19535 | 0.72 | 0.254499 |
Target: 5'- gUCCgguuGCUGCGcuuucggGCCGAgCGCCGCCg -3' miRNA: 3'- aAGG----CGACGUuaa----CGGCU-GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 19797 | 0.67 | 0.459178 |
Target: 5'- --gCGUgaUGCGAUUGCCGACGUgcguuucgaUGCCg -3' miRNA: 3'- aagGCG--ACGUUAACGGCUGCG---------GCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 21308 | 0.67 | 0.499306 |
Target: 5'- -gCCGCcGCGuacG-CGAgGCCGCCCg -3' miRNA: 3'- aaGGCGaCGUuaaCgGCUgCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 22175 | 0.68 | 0.420831 |
Target: 5'- aUCCGCgcaggucgGCAuuUUGCUGGCGgCCGUgCg -3' miRNA: 3'- aAGGCGa-------CGUu-AACGGCUGC-GGCGgG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 22844 | 0.72 | 0.226153 |
Target: 5'- -gCCGCUGCucggccgccauauucGAUUGCUGcacgcuCGUCGCCCa -3' miRNA: 3'- aaGGCGACG---------------UUAACGGCu-----GCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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