Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22563 | 5' | -58.3 | NC_005091.1 | + | 23973 | 0.66 | 0.519949 |
Target: 5'- -gUgGCUGaaucGUUGCCGACGCgCGUCa -3' miRNA: 3'- aaGgCGACgu--UAACGGCUGCG-GCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 24682 | 0.69 | 0.350275 |
Target: 5'- cUCCGUcGaCAGggcgcgcgccUUGCaaCGACGCCGCCCc -3' miRNA: 3'- aAGGCGaC-GUU----------AACG--GCUGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 25208 | 0.69 | 0.342068 |
Target: 5'- -gCCGCUGCAccGggGUCGAUGCaGCCg -3' miRNA: 3'- aaGGCGACGU--UaaCGGCUGCGgCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 25233 | 0.66 | 0.55151 |
Target: 5'- cUUCaCGCcgaGCAcgagGCCGAucaCGUCGCCCa -3' miRNA: 3'- -AAG-GCGa--CGUuaa-CGGCU---GCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26305 | 0.66 | 0.562164 |
Target: 5'- -gCCGCU-CAg--GCCGAagcUGCCGCCg -3' miRNA: 3'- aaGGCGAcGUuaaCGGCU---GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26402 | 0.71 | 0.288548 |
Target: 5'- gUCUGCUGCGGcaGCCGcagccuGCGuuGCCUg -3' miRNA: 3'- aAGGCGACGUUaaCGGC------UGCggCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26439 | 0.67 | 0.449414 |
Target: 5'- -aCCGCgcGCGGgccGCCGGgGCUGCCa -3' miRNA: 3'- aaGGCGa-CGUUaa-CGGCUgCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26683 | 0.74 | 0.171853 |
Target: 5'- -gCUGCUGCGGcgGCCGGCGgCGgCCg -3' miRNA: 3'- aaGGCGACGUUaaCGGCUGCgGCgGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 33870 | 0.69 | 0.367105 |
Target: 5'- aUUCGCUa------CCGACGCCGCCCg -3' miRNA: 3'- aAGGCGAcguuaacGGCUGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 34860 | 0.68 | 0.393373 |
Target: 5'- -cCCGCUGaagcgGAUcGCCGACGCgCGCggCCg -3' miRNA: 3'- aaGGCGACg----UUAaCGGCUGCG-GCG--GG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 39156 | 0.75 | 0.146096 |
Target: 5'- aUUCCGUUGCuugcgGCCGuCGUCGCCUc -3' miRNA: 3'- -AAGGCGACGuuaa-CGGCuGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 44533 | 0.73 | 0.218073 |
Target: 5'- -gUCGCUGCcGUcGCCuucguCGCCGCCCg -3' miRNA: 3'- aaGGCGACGuUAaCGGcu---GCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 44740 | 0.69 | 0.375726 |
Target: 5'- cUUCGUUGC---UGCCuugcCGCCGCCCu -3' miRNA: 3'- aAGGCGACGuuaACGGcu--GCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 45669 | 0.66 | 0.540918 |
Target: 5'- cUUCGU--CAGgaaGCCGACGCCGgCCa -3' miRNA: 3'- aAGGCGacGUUaa-CGGCUGCGGCgGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 51021 | 0.67 | 0.479036 |
Target: 5'- -aCCGCgcuUGCGGUcGCUGACGCgGCa- -3' miRNA: 3'- aaGGCG---ACGUUAaCGGCUGCGgCGgg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 51466 | 0.66 | 0.55151 |
Target: 5'- cUUCCGCc-CAcUUGgCGAUGCCGCgCg -3' miRNA: 3'- -AAGGCGacGUuAACgGCUGCGGCGgG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 52206 | 0.66 | 0.562164 |
Target: 5'- gUCCGCaacGCGccccgcGCCGGCgacgGCCGCCUu -3' miRNA: 3'- aAGGCGa--CGUuaa---CGGCUG----CGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 52772 | 0.7 | 0.310643 |
Target: 5'- -gCCGUcGCAcugGCCGGCGUgcgCGCCCg -3' miRNA: 3'- aaGGCGaCGUuaaCGGCUGCG---GCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 52883 | 0.67 | 0.469053 |
Target: 5'- -gCUGCUGCcgcGUgcgGCCuGAuCGCCGCCg -3' miRNA: 3'- aaGGCGACGu--UAa--CGG-CU-GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 53162 | 0.7 | 0.310643 |
Target: 5'- aUUCCGCUGUAGcgcGCgGGCGCgaGCCUu -3' miRNA: 3'- -AAGGCGACGUUaa-CGgCUGCGg-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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