miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22563 5' -58.3 NC_005091.1 + 44740 0.69 0.375726
Target:  5'- cUUCGUUGC---UGCCuugcCGCCGCCCu -3'
miRNA:   3'- aAGGCGACGuuaACGGcu--GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 34860 0.68 0.393373
Target:  5'- -cCCGCUGaagcgGAUcGCCGACGCgCGCggCCg -3'
miRNA:   3'- aaGGCGACg----UUAaCGGCUGCG-GCG--GG- -5'
22563 5' -58.3 NC_005091.1 + 22175 0.68 0.420831
Target:  5'- aUCCGCgcaggucgGCAuuUUGCUGGCGgCCGUgCg -3'
miRNA:   3'- aAGGCGa-------CGUu-AACGGCUGC-GGCGgG- -5'
22563 5' -58.3 NC_005091.1 + 18965 0.68 0.439766
Target:  5'- gUCCGC----GUUGCCuugaAUGCCGCCCu -3'
miRNA:   3'- aAGGCGacguUAACGGc---UGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 26439 0.67 0.449414
Target:  5'- -aCCGCgcGCGGgccGCCGGgGCUGCCa -3'
miRNA:   3'- aaGGCGa-CGUUaa-CGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 19797 0.67 0.459178
Target:  5'- --gCGUgaUGCGAUUGCCGACGUgcguuucgaUGCCg -3'
miRNA:   3'- aagGCG--ACGUUAACGGCUGCG---------GCGGg -5'
22563 5' -58.3 NC_005091.1 + 10467 0.67 0.459178
Target:  5'- gUCCGCUucgucgccgaagGCGGUauCCG-CGCCGUCCu -3'
miRNA:   3'- aAGGCGA------------CGUUAacGGCuGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 52883 0.67 0.469053
Target:  5'- -gCUGCUGCcgcGUgcgGCCuGAuCGCCGCCg -3'
miRNA:   3'- aaGGCGACGu--UAa--CGG-CU-GCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 56291 0.67 0.479036
Target:  5'- -cCCGCUGUAAau-CCGG-GCCGCCa -3'
miRNA:   3'- aaGGCGACGUUaacGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 51021 0.67 0.479036
Target:  5'- -aCCGCgcuUGCGGUcGCUGACGCgGCa- -3'
miRNA:   3'- aaGGCG---ACGUUAaCGGCUGCGgCGgg -5'
22563 5' -58.3 NC_005091.1 + 21308 0.67 0.499306
Target:  5'- -gCCGCcGCGuacG-CGAgGCCGCCCg -3'
miRNA:   3'- aaGGCGaCGUuaaCgGCUgCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 23973 0.66 0.519949
Target:  5'- -gUgGCUGaaucGUUGCCGACGCgCGUCa -3'
miRNA:   3'- aaGgCGACgu--UAACGGCUGCG-GCGGg -5'
22563 5' -58.3 NC_005091.1 + 6610 0.66 0.519949
Target:  5'- cUCgCGCgGCGuccgggcUGCCGGCGUucaUGCCCg -3'
miRNA:   3'- aAG-GCGaCGUua-----ACGGCUGCG---GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 55685 0.66 0.519949
Target:  5'- -gCCGCauCAcUUcGCCGAuCGCCGCCUg -3'
miRNA:   3'- aaGGCGacGUuAA-CGGCU-GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 4667 0.66 0.530396
Target:  5'- cUCCGC-GCGucguuuuggGCCGGgGCCGUCg -3'
miRNA:   3'- aAGGCGaCGUuaa------CGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 14767 0.66 0.530396
Target:  5'- gUUCCuGUcagUGCGGUUGUCGGC-CCGgCCg -3'
miRNA:   3'- -AAGG-CG---ACGUUAACGGCUGcGGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 11425 0.66 0.530396
Target:  5'- gUUUCGCgGCGGccacgucgGCCGACGCuuuCGCCUu -3'
miRNA:   3'- -AAGGCGaCGUUaa------CGGCUGCG---GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 45669 0.66 0.540918
Target:  5'- cUUCGU--CAGgaaGCCGACGCCGgCCa -3'
miRNA:   3'- aAGGCGacGUUaa-CGGCUGCGGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 55504 0.66 0.550448
Target:  5'- -gCCGCgacGCuAUUGCgaagcuucgugagCGugGCCGCCa -3'
miRNA:   3'- aaGGCGa--CGuUAACG-------------GCugCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 51466 0.66 0.55151
Target:  5'- cUUCCGCc-CAcUUGgCGAUGCCGCgCg -3'
miRNA:   3'- -AAGGCGacGUuAACgGCUGCGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.