miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22563 5' -58.3 NC_005091.1 + 4667 0.66 0.530396
Target:  5'- cUCCGC-GCGucguuuuggGCCGGgGCCGUCg -3'
miRNA:   3'- aAGGCGaCGUuaa------CGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 22175 0.68 0.420831
Target:  5'- aUCCGCgcaggucgGCAuuUUGCUGGCGgCCGUgCg -3'
miRNA:   3'- aAGGCGa-------CGUu-AACGGCUGC-GGCGgG- -5'
22563 5' -58.3 NC_005091.1 + 18965 0.68 0.439766
Target:  5'- gUCCGC----GUUGCCuugaAUGCCGCCCu -3'
miRNA:   3'- aAGGCGacguUAACGGc---UGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 19797 0.67 0.459178
Target:  5'- --gCGUgaUGCGAUUGCCGACGUgcguuucgaUGCCg -3'
miRNA:   3'- aagGCG--ACGUUAACGGCUGCG---------GCGGg -5'
22563 5' -58.3 NC_005091.1 + 56291 0.67 0.479036
Target:  5'- -cCCGCUGUAAau-CCGG-GCCGCCa -3'
miRNA:   3'- aaGGCGACGUUaacGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 21308 0.67 0.499306
Target:  5'- -gCCGCcGCGuacG-CGAgGCCGCCCg -3'
miRNA:   3'- aaGGCGaCGUuaaCgGCUgCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 6610 0.66 0.519949
Target:  5'- cUCgCGCgGCGuccgggcUGCCGGCGUucaUGCCCg -3'
miRNA:   3'- aAG-GCGaCGUua-----ACGGCUGCG---GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 23973 0.66 0.519949
Target:  5'- -gUgGCUGaaucGUUGCCGACGCgCGUCa -3'
miRNA:   3'- aaGgCGACgu--UAACGGCUGCG-GCGGg -5'
22563 5' -58.3 NC_005091.1 + 11425 0.66 0.530396
Target:  5'- gUUUCGCgGCGGccacgucgGCCGACGCuuuCGCCUu -3'
miRNA:   3'- -AAGGCGaCGUUaa------CGGCUGCG---GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 44740 0.69 0.375726
Target:  5'- cUUCGUUGC---UGCCuugcCGCCGCCCu -3'
miRNA:   3'- aAGGCGACGuuaACGGcu--GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 14246 0.69 0.375726
Target:  5'- -gCCGCcuUGCG--UGUCGuACGCCGaCCCg -3'
miRNA:   3'- aaGGCG--ACGUuaACGGC-UGCGGC-GGG- -5'
22563 5' -58.3 NC_005091.1 + 33870 0.69 0.367105
Target:  5'- aUUCGCUa------CCGACGCCGCCCg -3'
miRNA:   3'- aAGGCGAcguuaacGGCUGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 44533 0.73 0.218073
Target:  5'- -gUCGCUGCcGUcGCCuucguCGCCGCCCg -3'
miRNA:   3'- aaGGCGACGuUAaCGGcu---GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 22844 0.72 0.226153
Target:  5'- -gCCGCUGCucggccgccauauucGAUUGCUGcacgcuCGUCGCCCa -3'
miRNA:   3'- aaGGCGACG---------------UUAACGGCu-----GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 15313 0.72 0.248098
Target:  5'- cUUCCcCUGCGA-UGCCGAccaugugauCGCCuGCCCg -3'
miRNA:   3'- -AAGGcGACGUUaACGGCU---------GCGG-CGGG- -5'
22563 5' -58.3 NC_005091.1 + 15762 0.72 0.248098
Target:  5'- -aCCGCagcucgGCAAcacgcaUGCCGACGCC-CCCg -3'
miRNA:   3'- aaGGCGa-----CGUUa-----ACGGCUGCGGcGGG- -5'
22563 5' -58.3 NC_005091.1 + 19535 0.72 0.254499
Target:  5'- gUCCgguuGCUGCGcuuucggGCCGAgCGCCGCCg -3'
miRNA:   3'- aAGG----CGACGUuaa----CGGCU-GCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 6719 0.71 0.281462
Target:  5'- cUUgGCUGCGGUcGCCGuCGCCaacaagaagcaGCCCg -3'
miRNA:   3'- aAGgCGACGUUAaCGGCuGCGG-----------CGGG- -5'
22563 5' -58.3 NC_005091.1 + 26402 0.71 0.288548
Target:  5'- gUCUGCUGCGGcaGCCGcagccuGCGuuGCCUg -3'
miRNA:   3'- aAGGCGACGUUaaCGGC------UGCggCGGG- -5'
22563 5' -58.3 NC_005091.1 + 53162 0.7 0.310643
Target:  5'- aUUCCGCUGUAGcgcGCgGGCGCgaGCCUu -3'
miRNA:   3'- -AAGGCGACGUUaa-CGgCUGCGg-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.