miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22563 5' -58.3 NC_005091.1 + 52206 0.66 0.562164
Target:  5'- gUCCGCaacGCGccccgcGCCGGCgacgGCCGCCUu -3'
miRNA:   3'- aAGGCGa--CGUuaa---CGGCUG----CGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 52772 0.7 0.310643
Target:  5'- -gCCGUcGCAcugGCCGGCGUgcgCGCCCg -3'
miRNA:   3'- aaGGCGaCGUuaaCGGCUGCG---GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 13961 0.7 0.303137
Target:  5'- -aCgGCUGCAuc-GUCGGCGCCGCa- -3'
miRNA:   3'- aaGgCGACGUuaaCGGCUGCGGCGgg -5'
22563 5' -58.3 NC_005091.1 + 8333 1.1 0.000404
Target:  5'- aUUCCGCUGCAAUUGCCGACGCCGCCCa -3'
miRNA:   3'- -AAGGCGACGUUAACGGCUGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 14767 0.66 0.530396
Target:  5'- gUUCCuGUcagUGCGGUUGUCGGC-CCGgCCg -3'
miRNA:   3'- -AAGG-CG---ACGUUAACGGCUGcGGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 55685 0.66 0.519949
Target:  5'- -gCCGCauCAcUUcGCCGAuCGCCGCCUg -3'
miRNA:   3'- aaGGCGacGUuAA-CGGCU-GCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 52883 0.67 0.469053
Target:  5'- -gCUGCUGCcgcGUgcgGCCuGAuCGCCGCCg -3'
miRNA:   3'- aaGGCGACGu--UAa--CGG-CU-GCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 10467 0.67 0.459178
Target:  5'- gUCCGCUucgucgccgaagGCGGUauCCG-CGCCGUCCu -3'
miRNA:   3'- aAGGCGA------------CGUUAacGGCuGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 10219 0.69 0.375726
Target:  5'- --gCGCUcgGCGcgUGCCGGCGUaaCGUCCg -3'
miRNA:   3'- aagGCGA--CGUuaACGGCUGCG--GCGGG- -5'
22563 5' -58.3 NC_005091.1 + 24682 0.69 0.350275
Target:  5'- cUCCGUcGaCAGggcgcgcgccUUGCaaCGACGCCGCCCc -3'
miRNA:   3'- aAGGCGaC-GUU----------AACG--GCUGCGGCGGG- -5'
22563 5' -58.3 NC_005091.1 + 34860 0.68 0.393373
Target:  5'- -cCCGCUGaagcgGAUcGCCGACGCgCGCggCCg -3'
miRNA:   3'- aaGGCGACg----UUAaCGGCUGCG-GCG--GG- -5'
22563 5' -58.3 NC_005091.1 + 26305 0.66 0.562164
Target:  5'- -gCCGCU-CAg--GCCGAagcUGCCGCCg -3'
miRNA:   3'- aaGGCGAcGUuaaCGGCU---GCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 25208 0.69 0.342068
Target:  5'- -gCCGCUGCAccGggGUCGAUGCaGCCg -3'
miRNA:   3'- aaGGCGACGU--UaaCGGCUGCGgCGGg -5'
22563 5' -58.3 NC_005091.1 + 55504 0.66 0.550448
Target:  5'- -gCCGCgacGCuAUUGCgaagcuucgugagCGugGCCGCCa -3'
miRNA:   3'- aaGGCGa--CGuUAACG-------------GCugCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 26439 0.67 0.449414
Target:  5'- -aCCGCgcGCGGgccGCCGGgGCUGCCa -3'
miRNA:   3'- aaGGCGa-CGUUaa-CGGCUgCGGCGGg -5'
22563 5' -58.3 NC_005091.1 + 56915 0.7 0.334001
Target:  5'- cUCUGCacgaucgGCAAUUGCCGuCGCUGgCUg -3'
miRNA:   3'- aAGGCGa------CGUUAACGGCuGCGGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 26683 0.74 0.171853
Target:  5'- -gCUGCUGCGGcgGCCGGCGgCGgCCg -3'
miRNA:   3'- aaGGCGACGUUaaCGGCUGCgGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 45669 0.66 0.540918
Target:  5'- cUUCGU--CAGgaaGCCGACGCCGgCCa -3'
miRNA:   3'- aAGGCGacGUUaa-CGGCUGCGGCgGG- -5'
22563 5' -58.3 NC_005091.1 + 51021 0.67 0.479036
Target:  5'- -aCCGCgcuUGCGGUcGCUGACGCgGCa- -3'
miRNA:   3'- aaGGCG---ACGUUAaCGGCUGCGgCGgg -5'
22563 5' -58.3 NC_005091.1 + 6954 0.69 0.367105
Target:  5'- cUUCCGCUGCGcgUGCgacggaGACaGCCauuucguacgGCCCc -3'
miRNA:   3'- -AAGGCGACGUuaACGg-----CUG-CGG----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.