miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 5' -57.6 NC_005091.1 + 44765 0.66 0.595593
Target:  5'- uUGCCGGccGCcGUGgucguugccuuCGUGCCUUcGGCCg -3'
miRNA:   3'- -ACGGCUcaCGuUAC-----------GCGCGGAA-CCGG- -5'
22564 5' -57.6 NC_005091.1 + 26414 0.66 0.583674
Target:  5'- aGCCGcAGccUGCGuugccUGCGCcuguugauucaucGCCUUGGCg -3'
miRNA:   3'- aCGGC-UC--ACGUu----ACGCG-------------CGGAACCGg -5'
22564 5' -57.6 NC_005091.1 + 33572 0.66 0.578271
Target:  5'- aUGCCggccucucgaccuauGAGcGCGAaaucGCGCGCCUcGGCg -3'
miRNA:   3'- -ACGG---------------CUCaCGUUa---CGCGCGGAaCCGg -5'
22564 5' -57.6 NC_005091.1 + 18360 0.66 0.573957
Target:  5'- aGCCGugGGUGCGAUGUauaGCGUCacaacGGCg -3'
miRNA:   3'- aCGGC--UCACGUUACG---CGCGGaa---CCGg -5'
22564 5' -57.6 NC_005091.1 + 25870 0.66 0.573957
Target:  5'- aUGCCGAG-GCGuucgGCuuGCGCCUgcacguauUGGUa -3'
miRNA:   3'- -ACGGCUCaCGUua--CG--CGCGGA--------ACCGg -5'
22564 5' -57.6 NC_005091.1 + 6441 0.66 0.573957
Target:  5'- -cCCGAGgGCAgcGUGCGCGCUgc-GCUg -3'
miRNA:   3'- acGGCUCaCGU--UACGCGCGGaacCGG- -5'
22564 5' -57.6 NC_005091.1 + 19465 0.66 0.563206
Target:  5'- cGCCGAacacgacgGCcuGcgGCGUGCCcuccgUGGCCu -3'
miRNA:   3'- aCGGCUca------CG--UuaCGCGCGGa----ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 4224 0.66 0.562133
Target:  5'- gGCUGuggcagaggaugaAGUGCg--GCGUGCCg-GGCCa -3'
miRNA:   3'- aCGGC-------------UCACGuuaCGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 29078 0.67 0.541873
Target:  5'- -aCCGAGUGCAGUucgGCGCggagacGCCUgccccuGCCg -3'
miRNA:   3'- acGGCUCACGUUA---CGCG------CGGAac----CGG- -5'
22564 5' -57.6 NC_005091.1 + 37128 0.67 0.541873
Target:  5'- gGCCcGGcGCAGUGCGgGaagaCUgaUGGCCu -3'
miRNA:   3'- aCGGcUCaCGUUACGCgCg---GA--ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 28710 0.67 0.541873
Target:  5'- cGCCGGG-GCc-UGCGCGCau--GCCa -3'
miRNA:   3'- aCGGCUCaCGuuACGCGCGgaacCGG- -5'
22564 5' -57.6 NC_005091.1 + 44191 0.67 0.531307
Target:  5'- cGCCGugcgcgacAGUGCcguAUGCgGCGUCUUcGCCu -3'
miRNA:   3'- aCGGC--------UCACGu--UACG-CGCGGAAcCGG- -5'
22564 5' -57.6 NC_005091.1 + 9271 0.67 0.531307
Target:  5'- cGCCGGcUGCAcgGCGaCGCa--GGCUc -3'
miRNA:   3'- aCGGCUcACGUuaCGC-GCGgaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 36516 0.67 0.531307
Target:  5'- cGCCGAuaccGUGCGcAUGgaaGCGCCgugcugcggcGGCCg -3'
miRNA:   3'- aCGGCU----CACGU-UACg--CGCGGaa--------CCGG- -5'
22564 5' -57.6 NC_005091.1 + 2882 0.67 0.530255
Target:  5'- gGCCGuuUGCGugGUGUGCGaauauguCCUUgcGGCCg -3'
miRNA:   3'- aCGGCucACGU--UACGCGC-------GGAA--CCGG- -5'
22564 5' -57.6 NC_005091.1 + 47883 0.67 0.520817
Target:  5'- cGCCGGGUGCGGUuuGUaGCCg-GGUCc -3'
miRNA:   3'- aCGGCUCACGUUAcgCG-CGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 50051 0.67 0.510408
Target:  5'- -aUCGAGcGCAAcGCGUGCC--GGCCu -3'
miRNA:   3'- acGGCUCaCGUUaCGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 18310 0.67 0.500087
Target:  5'- cUGCCGAccucGCGAUGCGCGU---GGCg -3'
miRNA:   3'- -ACGGCUca--CGUUACGCGCGgaaCCGg -5'
22564 5' -57.6 NC_005091.1 + 20000 0.67 0.500087
Target:  5'- cUGCCGuGggcgGCGAUugguucgaGUGCGCCgaGGCg -3'
miRNA:   3'- -ACGGCuCa---CGUUA--------CGCGCGGaaCCGg -5'
22564 5' -57.6 NC_005091.1 + 33646 0.67 0.500087
Target:  5'- aUG-CGAGUGgAucgGCGCGUCgcaaGGCCa -3'
miRNA:   3'- -ACgGCUCACgUua-CGCGCGGaa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.