miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 5' -57.6 NC_005091.1 + 26895 0.68 0.430725
Target:  5'- uUGCCGAGacuguccgucccUGCGGuUGCG-GCCUUcGCCu -3'
miRNA:   3'- -ACGGCUC------------ACGUU-ACGCgCGGAAcCGG- -5'
22564 5' -57.6 NC_005091.1 + 10086 0.68 0.430725
Target:  5'- gUGCCGGGUuccaguucgagGCGGUGCagGUGC-UUGGCUg -3'
miRNA:   3'- -ACGGCUCA-----------CGUUACG--CGCGgAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 24792 0.69 0.421279
Target:  5'- gGCCGAGgaauuccGCcGUGCuGCGCa--GGCCg -3'
miRNA:   3'- aCGGCUCa------CGuUACG-CGCGgaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 46286 0.69 0.421279
Target:  5'- gUGCCaGAGUuCGAgGcCGCGCUcgUGGCCg -3'
miRNA:   3'- -ACGG-CUCAcGUUaC-GCGCGGa-ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 52773 0.69 0.421279
Target:  5'- aGCCGuc-GCAcuggccggcGUGCGCGCCcgucUGGUCg -3'
miRNA:   3'- aCGGCucaCGU---------UACGCGCGGa---ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 40972 0.69 0.384781
Target:  5'- cGCUGcGUGCGcUGCGCGCCU---CCg -3'
miRNA:   3'- aCGGCuCACGUuACGCGCGGAaccGG- -5'
22564 5' -57.6 NC_005091.1 + 48832 0.7 0.367333
Target:  5'- cUGCCGcGUGUg--GCGUGCCcgcaacgcaUGGCCg -3'
miRNA:   3'- -ACGGCuCACGuuaCGCGCGGa--------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 51957 0.7 0.364764
Target:  5'- aGCCGAGUGCGcuacggccuucgauAUGCGUccgguagcucGCgaUGGUCg -3'
miRNA:   3'- aCGGCUCACGU--------------UACGCG----------CGgaACCGG- -5'
22564 5' -57.6 NC_005091.1 + 798 0.7 0.350438
Target:  5'- aUGCCGAucucGUGCGcUGCGCuGCCgcgUGGgUg -3'
miRNA:   3'- -ACGGCU----CACGUuACGCG-CGGa--ACCgG- -5'
22564 5' -57.6 NC_005091.1 + 498 0.7 0.3422
Target:  5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3'
miRNA:   3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 40557 0.7 0.3422
Target:  5'- cGCCGAGUcgGUAuccCGCGCCgagcacGGCCg -3'
miRNA:   3'- aCGGCUCA--CGUuacGCGCGGaa----CCGG- -5'
22564 5' -57.6 NC_005091.1 + 57892 0.7 0.3422
Target:  5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3'
miRNA:   3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 44725 0.7 0.3325
Target:  5'- gGCCGAGUGCuucggcuucguUGC-UGCCUUGccGCCg -3'
miRNA:   3'- aCGGCUCACGuu---------ACGcGCGGAAC--CGG- -5'
22564 5' -57.6 NC_005091.1 + 22846 0.71 0.310658
Target:  5'- aUGCCGAGcGCA---CGCGCCUgaacGCCg -3'
miRNA:   3'- -ACGGCUCaCGUuacGCGCGGAac--CGG- -5'
22564 5' -57.6 NC_005091.1 + 8715 0.71 0.298675
Target:  5'- aUGCCGGGUGC-AUGauCGCCUgaauccccuucacgaUGGCUu -3'
miRNA:   3'- -ACGGCUCACGuUACgcGCGGA---------------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 31687 0.71 0.295735
Target:  5'- aGaCCGGGUGCGAUaccguaGcCGCGCC--GGCCg -3'
miRNA:   3'- aC-GGCUCACGUUA------C-GCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 50880 0.72 0.277178
Target:  5'- aUGCaCcAGUGCAAcGCGCGCCgagcguugccaagcUGGCCc -3'
miRNA:   3'- -ACG-GcUCACGUUaCGCGCGGa-------------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 55997 0.72 0.274407
Target:  5'- uUGCCGAa-GUAaucAUGCGCGCC--GGCCg -3'
miRNA:   3'- -ACGGCUcaCGU---UACGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 28888 0.72 0.247909
Target:  5'- gGCgGAcGUGCAG-GUGCGCCUcGGCg -3'
miRNA:   3'- aCGgCU-CACGUUaCGCGCGGAaCCGg -5'
22564 5' -57.6 NC_005091.1 + 48791 0.73 0.21217
Target:  5'- gUGUCGcucGUGCAGUGC-CGCaUUGGCCg -3'
miRNA:   3'- -ACGGCu--CACGUUACGcGCGgAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.