Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22566 | 3' | -56.2 | NC_005091.1 | + | 443 | 0.71 | 0.446089 |
Target: 5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3' miRNA: 3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 1072 | 0.71 | 0.43668 |
Target: 5'- gCCcGCGUCGAGCAGguccuGCG-GGACGGa -3' miRNA: 3'- -GGcCGCAGCUCGUCgc---UGCaCUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 5323 | 0.67 | 0.672531 |
Target: 5'- aCGGcCGUgCGGcCAGUGAUGUGAucCGGg -3' miRNA: 3'- gGCC-GCA-GCUcGUCGCUGCACUu-GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 6173 | 0.67 | 0.66194 |
Target: 5'- gCgGGCGaCGAGCcgaAGCGGCGcGAcaguCGGa -3' miRNA: 3'- -GgCCGCaGCUCG---UCGCUGCaCUu---GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 6615 | 0.67 | 0.672531 |
Target: 5'- gCGGCGUcCGGGCuGCcGGCGUucaugcccGAGCGc -3' miRNA: 3'- gGCCGCA-GCUCGuCG-CUGCA--------CUUGCc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 6983 | 0.75 | 0.281962 |
Target: 5'- cCCGGCGucaUCGAGCugcuGGCGGaaggcaagGUGAGCGGc -3' miRNA: 3'- -GGCCGC---AGCUCG----UCGCUg-------CACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 7200 | 0.7 | 0.484812 |
Target: 5'- aUGGCGgCGAGCAGCGAgCGgccGACGu -3' miRNA: 3'- gGCCGCaGCUCGUCGCU-GCac-UUGCc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 7900 | 0.67 | 0.683087 |
Target: 5'- aUCGGCuuGUCGuAGCcucGCGACGguucGAugGGu -3' miRNA: 3'- -GGCCG--CAGC-UCGu--CGCUGCa---CUugCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 13596 | 1.12 | 0.000784 |
Target: 5'- cCCGGCGUCGAGCAGCGACGUGAACGGu -3' miRNA: 3'- -GGCCGCAGCUCGUCGCUGCACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 14436 | 0.69 | 0.577034 |
Target: 5'- aCCGGCGUCGGGaAGUugaACGUGAAg-- -3' miRNA: 3'- -GGCCGCAGCUCgUCGc--UGCACUUgcc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 14597 | 0.66 | 0.724757 |
Target: 5'- cCCGGCaUCGAGCGGC-ACGcuuacCGGc -3' miRNA: 3'- -GGCCGcAGCUCGUCGcUGCacuu-GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 16307 | 0.66 | 0.756135 |
Target: 5'- gCCGGCGgccucgucccugaucCGGGC-GCGACG---GCGGg -3' miRNA: 3'- -GGCCGCa--------------GCUCGuCGCUGCacuUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 16524 | 0.85 | 0.056715 |
Target: 5'- cCCGGCGUCGAGCauGGCGACGcUGu-CGGa -3' miRNA: 3'- -GGCCGCAGCUCG--UCGCUGC-ACuuGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 16975 | 0.68 | 0.640687 |
Target: 5'- aCgGaGCGUCGGGCugGGgGACGaccacGAACGGc -3' miRNA: 3'- -GgC-CGCAGCUCG--UCgCUGCa----CUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 17000 | 0.66 | 0.765046 |
Target: 5'- cUCGGCGUCuGGUGG-GGC-UGGGCGGn -3' miRNA: 3'- -GGCCGCAGcUCGUCgCUGcACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 18164 | 0.76 | 0.243046 |
Target: 5'- cCCGGCGaUCGAGC-GUGAgCGUGAACc- -3' miRNA: 3'- -GGCCGC-AGCUCGuCGCU-GCACUUGcc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 19528 | 0.69 | 0.545672 |
Target: 5'- uUCGGCGaUUGcugguGCAGCGAU-UGGACGGu -3' miRNA: 3'- -GGCCGC-AGCu----CGUCGCUGcACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 20012 | 0.66 | 0.755139 |
Target: 5'- aCGGCGUuaucacugccgUGGGCGGCGAUugguucgaGUGcgccgaGGCGGg -3' miRNA: 3'- gGCCGCA-----------GCUCGUCGCUG--------CAC------UUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 20211 | 0.67 | 0.683087 |
Target: 5'- cCCGGacaCGaAGCGgacGUGGCGUGGAUGGg -3' miRNA: 3'- -GGCCgcaGC-UCGU---CGCUGCACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 20356 | 0.66 | 0.755139 |
Target: 5'- aCGGCGgcuacUCGcaaAGCGGCGACGcGu-CGGc -3' miRNA: 3'- gGCCGC-----AGC---UCGUCGCUGCaCuuGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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