Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22566 | 3' | -56.2 | NC_005091.1 | + | 20356 | 0.66 | 0.755139 |
Target: 5'- aCGGCGgcuacUCGcaaAGCGGCGACGcGu-CGGc -3' miRNA: 3'- gGCCGC-----AGC---UCGUCGCUGCaCuuGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 50812 | 0.69 | 0.545672 |
Target: 5'- gCGGcCGUCGuGCGcGCGGCuauccgGAGCGGu -3' miRNA: 3'- gGCC-GCAGCuCGU-CGCUGca----CUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 24027 | 0.71 | 0.465242 |
Target: 5'- cCCGGCaUCu-GCGGCGGCGaaGGGCGGu -3' miRNA: 3'- -GGCCGcAGcuCGUCGCUGCa-CUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 13596 | 1.12 | 0.000784 |
Target: 5'- cCCGGCGUCGAGCAGCGACGUGAACGGu -3' miRNA: 3'- -GGCCGCAGCUCGUCGCUGCACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 55510 | 0.67 | 0.704054 |
Target: 5'- aCGGCGgccgCGAcGCuauuGCGAagcuuCGUGAGCGu -3' miRNA: 3'- gGCCGCa---GCU-CGu---CGCU-----GCACUUGCc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 34962 | 0.67 | 0.700923 |
Target: 5'- gUCGGCuUCGcuuGGCGGCGGCG-GAcuugaaggcgcgucGCGGc -3' miRNA: 3'- -GGCCGcAGC---UCGUCGCUGCaCU--------------UGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 20211 | 0.67 | 0.683087 |
Target: 5'- cCCGGacaCGaAGCGgacGUGGCGUGGAUGGg -3' miRNA: 3'- -GGCCgcaGC-UCGU---CGCUGCACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 17000 | 0.66 | 0.765046 |
Target: 5'- cUCGGCGUCuGGUGG-GGC-UGGGCGGn -3' miRNA: 3'- -GGCCGCAGcUCGUCgCUGcACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 16307 | 0.66 | 0.756135 |
Target: 5'- gCCGGCGgccucgucccugaucCGGGC-GCGACG---GCGGg -3' miRNA: 3'- -GGCCGCa--------------GCUCGuCGCUGCacuUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 44884 | 0.69 | 0.587583 |
Target: 5'- -aGGCGguaCGGGCGGCGGCaa-GGCGGc -3' miRNA: 3'- ggCCGCa--GCUCGUCGCUGcacUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 6173 | 0.67 | 0.66194 |
Target: 5'- gCgGGCGaCGAGCcgaAGCGGCGcGAcaguCGGa -3' miRNA: 3'- -GgCCGCaGCUCG---UCGCUGCaCUu---GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 44636 | 0.67 | 0.668298 |
Target: 5'- -aGGCGcucgaagaagacgCGGGCGGCGACGaagGcGACGGc -3' miRNA: 3'- ggCCGCa------------GCUCGUCGCUGCa--C-UUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 21586 | 0.66 | 0.734985 |
Target: 5'- gCGGCa--GAGCAcgcuuGCGGCGaUGAACGa -3' miRNA: 3'- gGCCGcagCUCGU-----CGCUGC-ACUUGCc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 16975 | 0.68 | 0.640687 |
Target: 5'- aCgGaGCGUCGGGCugGGgGACGaccacGAACGGc -3' miRNA: 3'- -GgC-CGCAGCUCG--UCgCUGCa----CUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 14597 | 0.66 | 0.724757 |
Target: 5'- cCCGGCaUCGAGCGGC-ACGcuuacCGGc -3' miRNA: 3'- -GGCCGcAGCUCGUCGcUGCacuu-GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 5323 | 0.67 | 0.672531 |
Target: 5'- aCGGcCGUgCGGcCAGUGAUGUGAucCGGg -3' miRNA: 3'- gGCC-GCA-GCUcGUCGCUGCACUu-GCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 36346 | 0.68 | 0.630046 |
Target: 5'- aUGGCGUCGuGGCGGCGuucaucuCGUG-GCGc -3' miRNA: 3'- gGCCGCAGC-UCGUCGCu------GCACuUGCc -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 19528 | 0.69 | 0.545672 |
Target: 5'- uUCGGCGaUUGcugguGCAGCGAU-UGGACGGu -3' miRNA: 3'- -GGCCGC-AGCu----CGUCGCUGcACUUGCC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 31095 | 0.66 | 0.711334 |
Target: 5'- uCCGGCGcUcaccgugcaacugaCGGGCGGCGcaGCGUGGGaucaGGc -3' miRNA: 3'- -GGCCGC-A--------------GCUCGUCGC--UGCACUUg---CC- -5' |
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22566 | 3' | -56.2 | NC_005091.1 | + | 7900 | 0.67 | 0.683087 |
Target: 5'- aUCGGCuuGUCGuAGCcucGCGACGguucGAugGGu -3' miRNA: 3'- -GGCCG--CAGC-UCGu--CGCUGCa---CUugCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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