miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 3' -56.2 NC_005091.1 + 44636 0.67 0.668298
Target:  5'- -aGGCGcucgaagaagacgCGGGCGGCGACGaagGcGACGGc -3'
miRNA:   3'- ggCCGCa------------GCUCGUCGCUGCa--C-UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 6173 0.67 0.66194
Target:  5'- gCgGGCGaCGAGCcgaAGCGGCGcGAcaguCGGa -3'
miRNA:   3'- -GgCCGCaGCUCG---UCGCUGCaCUu---GCC- -5'
22566 3' -56.2 NC_005091.1 + 16975 0.68 0.640687
Target:  5'- aCgGaGCGUCGGGCugGGgGACGaccacGAACGGc -3'
miRNA:   3'- -GgC-CGCAGCUCG--UCgCUGCa----CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 36346 0.68 0.630046
Target:  5'- aUGGCGUCGuGGCGGCGuucaucuCGUG-GCGc -3'
miRNA:   3'- gGCCGCAGC-UCGUCGCu------GCACuUGCc -5'
22566 3' -56.2 NC_005091.1 + 44884 0.69 0.587583
Target:  5'- -aGGCGguaCGGGCGGCGGCaa-GGCGGc -3'
miRNA:   3'- ggCCGCa--GCUCGUCGCUGcacUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 14436 0.69 0.577034
Target:  5'- aCCGGCGUCGGGaAGUugaACGUGAAg-- -3'
miRNA:   3'- -GGCCGCAGCUCgUCGc--UGCACUUgcc -5'
22566 3' -56.2 NC_005091.1 + 32208 0.69 0.556072
Target:  5'- gCGGCGgcagCGAGCAucaccuucGCGuCGUcAACGGa -3'
miRNA:   3'- gGCCGCa---GCUCGU--------CGCuGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 19528 0.69 0.545672
Target:  5'- uUCGGCGaUUGcugguGCAGCGAU-UGGACGGu -3'
miRNA:   3'- -GGCCGC-AGCu----CGUCGCUGcACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 50812 0.69 0.545672
Target:  5'- gCGGcCGUCGuGCGcGCGGCuauccgGAGCGGu -3'
miRNA:   3'- gGCC-GCAGCuCGU-CGCUGca----CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 57270 0.7 0.525069
Target:  5'- cCCGGCGUCG-GCAGgaggaccaCGGCaUGAGCa- -3'
miRNA:   3'- -GGCCGCAGCuCGUC--------GCUGcACUUGcc -5'
22566 3' -56.2 NC_005091.1 + 7200 0.7 0.484812
Target:  5'- aUGGCGgCGAGCAGCGAgCGgccGACGu -3'
miRNA:   3'- gGCCGCaGCUCGUCGCU-GCac-UUGCc -5'
22566 3' -56.2 NC_005091.1 + 48446 0.7 0.484812
Target:  5'- uUCGGgGaaGGGCAGCGGCGcuauGACGGa -3'
miRNA:   3'- -GGCCgCagCUCGUCGCUGCac--UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 50742 0.71 0.465242
Target:  5'- aCGGCGUCGAauauCuGCGGCacGAGCGGa -3'
miRNA:   3'- gGCCGCAGCUc---GuCGCUGcaCUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 24027 0.71 0.465242
Target:  5'- cCCGGCaUCu-GCGGCGGCGaaGGGCGGu -3'
miRNA:   3'- -GGCCGcAGcuCGUCGCUGCa-CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 25200 0.71 0.455611
Target:  5'- aCCGGgGUCGAuGCAGCcggcGCGUcGAUGGc -3'
miRNA:   3'- -GGCCgCAGCU-CGUCGc---UGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 443 0.71 0.446089
Target:  5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3'
miRNA:   3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 30294 0.71 0.446089
Target:  5'- gUCGGUGaaaUCGAacggcuugcccGguGCGGCGUGAACGa -3'
miRNA:   3'- -GGCCGC---AGCU-----------CguCGCUGCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 57837 0.71 0.446089
Target:  5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3'
miRNA:   3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 1072 0.71 0.43668
Target:  5'- gCCcGCGUCGAGCAGguccuGCG-GGACGGa -3'
miRNA:   3'- -GGcCGCAGCUCGUCgc---UGCaCUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 51800 0.73 0.349321
Target:  5'- cCCGGCGUcCGGGCGuGCGGCuugcgcgcgauuGUGuACGGc -3'
miRNA:   3'- -GGCCGCA-GCUCGU-CGCUG------------CACuUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.