miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 22142 0.68 0.640308
Target:  5'- -aUACGACgaucaccaucaaGCGCA--GCGGCUUGGCUg -3'
miRNA:   3'- gcAUGCUG------------UGCGUucCGCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 11559 0.68 0.640308
Target:  5'- uGUAgGuuGCACGCAGGGCaucgagcuGGCgcuUCGGCUg -3'
miRNA:   3'- gCAUgC--UGUGCGUUCCG--------CCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 13067 0.68 0.651114
Target:  5'- --gGCGGCAgGCAAuacGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUgCGUUc--CGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 9057 0.68 0.651114
Target:  5'- uGUACGACGCGCucgccGGGaaGUaaCGGCCg -3'
miRNA:   3'- gCAUGCUGUGCGu----UCCgcCGa-GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 51550 0.67 0.661904
Target:  5'- cCGcGCGGCAuCGCcaaguGGGCGGaagcgaCGACCg -3'
miRNA:   3'- -GCaUGCUGU-GCGu----UCCGCCga----GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 24627 0.67 0.661904
Target:  5'- ---cCGAUACGUccGGCGGCUUGuACg -3'
miRNA:   3'- gcauGCUGUGCGuuCCGCCGAGC-UGg -5'
22569 3' -55.5 NC_005091.1 + 14086 0.67 0.682321
Target:  5'- -aUAUGugGCGCGcgaucuccggaacGGGCGGUgCGACg -3'
miRNA:   3'- gcAUGCugUGCGU-------------UCCGCCGaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 18362 0.67 0.698327
Target:  5'- gGUACGugACGaucugcucguuGCGGCUCGugUc -3'
miRNA:   3'- gCAUGCugUGCguuc-------CGCCGAGCugG- -5'
22569 3' -55.5 NC_005091.1 + 22034 0.67 0.704691
Target:  5'- uGUAuCGuCGCGUAuuggGGGUaacGCUCGACCa -3'
miRNA:   3'- gCAU-GCuGUGCGU----UCCGc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 38403 0.67 0.704691
Target:  5'- aGUACGcUACGagcaGCGGCUCG-CCg -3'
miRNA:   3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 52733 0.67 0.708921
Target:  5'- uCGUACcucauccucgguucgGGCAuCGCuuGGGCGGCugUCGGCUu -3'
miRNA:   3'- -GCAUG---------------CUGU-GCGu-UCCGCCG--AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 35214 0.67 0.714192
Target:  5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 374 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 16325 0.67 0.715244
Target:  5'- gCGaGCGGCGCaucGCAugccGGCGGcCUCGuCCc -3'
miRNA:   3'- -GCaUGCUGUG---CGUu---CCGCC-GAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 7504 0.67 0.715244
Target:  5'- --aGCGGCA-GCcgguucuucGGGCaGCUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGu--------UCCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 57768 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 55582 0.66 0.724673
Target:  5'- --cGCGGucCACGCGcucgugcAGGCGGCgaUCGGCg -3'
miRNA:   3'- gcaUGCU--GUGCGU-------UCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 49769 0.66 0.725717
Target:  5'- aCGgcuUGGCAUGCAGcacgcuCGGCUCGAUCg -3'
miRNA:   3'- -GCau-GCUGUGCGUUcc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 5098 0.66 0.725717
Target:  5'- ---uUGACACGCGuuGCGGCgcaggacgCGAUCg -3'
miRNA:   3'- gcauGCUGUGCGUucCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 30086 0.66 0.725717
Target:  5'- --gACGGaccaGCGCuuuaAGGGCGGCgaagucgcCGACCa -3'
miRNA:   3'- gcaUGCUg---UGCG----UUCCGCCGa-------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.