Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22570 | 3' | -55.6 | NC_005091.1 | + | 11370 | 0.71 | 0.44954 |
Target: 5'- uCCGcuGUuuGAGUCCgGGCGUCGGccGCg -3' miRNA: 3'- -GGCucCAggUUUAGGgCCGCAGCU--CG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 32493 | 0.72 | 0.410258 |
Target: 5'- cCCGAGGUUCAGcgcaucgucugCCCGGUacGUCuGAGCc -3' miRNA: 3'- -GGCUCCAGGUUua---------GGGCCG--CAG-CUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 18151 | 0.73 | 0.368075 |
Target: 5'- gCGAGcUUCGcggCCCGGCGaUCGAGCg -3' miRNA: 3'- gGCUCcAGGUuuaGGGCCGC-AGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 56130 | 0.74 | 0.315113 |
Target: 5'- aCCGgcaucuugcucaggaAGGUCCGGAUUCCaGCG-CGGGCg -3' miRNA: 3'- -GGC---------------UCCAGGUUUAGGGcCGCaGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 26653 | 0.74 | 0.312095 |
Target: 5'- aUCGA-GUCgGcggCCCGGCGUUGAGCg -3' miRNA: 3'- -GGCUcCAGgUuuaGGGCCGCAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 13610 | 0.79 | 0.164925 |
Target: 5'- aUCGAGGaaagCGA--CCCGGCGUCGAGCa -3' miRNA: 3'- -GGCUCCag--GUUuaGGGCCGCAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 16538 | 1.14 | 0.000571 |
Target: 5'- gCCGAGGUCCAAAUCCCGGCGUCGAGCa -3' miRNA: 3'- -GGCUCCAGGUUUAGGGCCGCAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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