miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 19317 1.13 0.000777
Target:  5'- cAGCGACACGCAGCACAUCACUUGCGCg -3'
miRNA:   3'- -UCGCUGUGCGUCGUGUAGUGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 2209 0.79 0.168872
Target:  5'- cGGcCGACGCGCuuaccGGCAcCAUCAgUUGCGCg -3'
miRNA:   3'- -UC-GCUGUGCG-----UCGU-GUAGUgAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 39338 0.78 0.210137
Target:  5'- uAGCGACACGCAGCggcGCgAUCACgagacaGUGCu -3'
miRNA:   3'- -UCGCUGUGCGUCG---UG-UAGUGaa----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10918 0.77 0.240137
Target:  5'- -aUGACACGCAGCGCGuacgggucgUCGCUgccgagugcaaUGCGCg -3'
miRNA:   3'- ucGCUGUGCGUCGUGU---------AGUGA-----------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 21593 0.76 0.259803
Target:  5'- aGGCGACGCgGCAGaGCA-CGCUUGCGg -3'
miRNA:   3'- -UCGCUGUG-CGUCgUGUaGUGAACGCg -5'
22576 5' -53.6 NC_005091.1 + 26660 0.76 0.266644
Target:  5'- cGGCGGCccgGCGUugAGCGCAUCAC--GCGCg -3'
miRNA:   3'- -UCGCUG---UGCG--UCGUGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 26408 0.75 0.288042
Target:  5'- uGCGGCAgcCGCAGCcuGCGUUGCcUGCGCc -3'
miRNA:   3'- uCGCUGU--GCGUCG--UGUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 36418 0.75 0.310766
Target:  5'- cGGCcGC-CGCAGCACggCGCUuccaUGCGCa -3'
miRNA:   3'- -UCGcUGuGCGUCGUGuaGUGA----ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 11562 0.75 0.326659
Target:  5'- aGGUuGCACGCAGgGCAUCgaGCUgGCGCu -3'
miRNA:   3'- -UCGcUGUGCGUCgUGUAG--UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 28267 0.74 0.343147
Target:  5'- cGGCGACGCGCuGGCG----GCUUGCGUg -3'
miRNA:   3'- -UCGCUGUGCG-UCGUguagUGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 55022 0.74 0.351613
Target:  5'- cGCGGCGCuugGCgAGCGCGUUGCggcgGCGCa -3'
miRNA:   3'- uCGCUGUG---CG-UCGUGUAGUGaa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33706 0.74 0.360226
Target:  5'- cGCGAgGCGaucggcGCACAUCuuCUUGCGCc -3'
miRNA:   3'- uCGCUgUGCgu----CGUGUAGu-GAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 5819 0.74 0.365464
Target:  5'- cAGCGucUACGCAGCACGgcucgaagcggugCGCggcgUGCGCa -3'
miRNA:   3'- -UCGCu-GUGCGUCGUGUa------------GUGa---ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 41053 0.74 0.368986
Target:  5'- cGGaGGCGCGCAGCGCA-CGCa-GCGCu -3'
miRNA:   3'- -UCgCUGUGCGUCGUGUaGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 55993 0.74 0.368986
Target:  5'- uGCG-CACGCAGUugGUCGgcCUgcUGCGCc -3'
miRNA:   3'- uCGCuGUGCGUCGugUAGU--GA--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 57411 0.74 0.368986
Target:  5'- cGCGGuCAUGCAGCGCAUgCGCgagucggGCGUu -3'
miRNA:   3'- uCGCU-GUGCGUCGUGUA-GUGaa-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 17 0.74 0.368986
Target:  5'- cGCGGuCAUGCAGCGCAUgCGCgagucggGCGUu -3'
miRNA:   3'- uCGCU-GUGCGUCGUGUA-GUGaa-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 52995 0.73 0.37789
Target:  5'- uGGCG-CAUGUGGCACGUCGaUUGCGa -3'
miRNA:   3'- -UCGCuGUGCGUCGUGUAGUgAACGCg -5'
22576 5' -53.6 NC_005091.1 + 31318 0.73 0.386937
Target:  5'- cAGCGAuCACGCGGC-CuugCACguucgGCGCg -3'
miRNA:   3'- -UCGCU-GUGCGUCGuGua-GUGaa---CGCG- -5'
22576 5' -53.6 NC_005091.1 + 51150 0.73 0.390595
Target:  5'- cAGCGACGCGCGGCGauugacggccguucCAUCaaugaaaaucgcccACggGCGCg -3'
miRNA:   3'- -UCGCUGUGCGUCGU--------------GUAG--------------UGaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.