miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 17 0.74 0.368986
Target:  5'- cGCGGuCAUGCAGCGCAUgCGCgagucggGCGUu -3'
miRNA:   3'- uCGCU-GUGCGUCGUGUA-GUGaa-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 552 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 883 0.66 0.817597
Target:  5'- cGCGGCAgCGCAGCGCAcgagaucggcauUCAgUUGaaaGg -3'
miRNA:   3'- uCGCUGU-GCGUCGUGU------------AGUgAACg--Cg -5'
22576 5' -53.6 NC_005091.1 + 1133 0.72 0.464199
Target:  5'- uGCGugGCGUgaaGGCGCAUUACgcuaacugGCGUg -3'
miRNA:   3'- uCGCugUGCG---UCGUGUAGUGaa------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 2209 0.79 0.168872
Target:  5'- cGGcCGACGCGCuuaccGGCAcCAUCAgUUGCGCg -3'
miRNA:   3'- -UC-GCUGUGCG-----UCGU-GUAGUgAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 5295 0.69 0.59289
Target:  5'- gGGCGGC-CGUuGCACuccuugCACcgUGCGCg -3'
miRNA:   3'- -UCGCUGuGCGuCGUGua----GUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 5819 0.74 0.365464
Target:  5'- cAGCGucUACGCAGCACGgcucgaagcggugCGCggcgUGCGCa -3'
miRNA:   3'- -UCGCu-GUGCGUCGUGUa------------GUGa---ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 5919 0.68 0.693169
Target:  5'- uGCG-CACGCcGCGCAcCGCUucgagccgugcUGCGUa -3'
miRNA:   3'- uCGCuGUGCGuCGUGUaGUGA-----------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 6449 0.66 0.788436
Target:  5'- cAGCGuGCGCGCuGCGCugaaggaaGCagGCGCg -3'
miRNA:   3'- -UCGC-UGUGCGuCGUGuag-----UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 6802 0.68 0.659888
Target:  5'- -cCGACGCGCAGCucgcgcucuacuACAUCACggaaaacCGCa -3'
miRNA:   3'- ucGCUGUGCGUCG------------UGUAGUGaac----GCG- -5'
22576 5' -53.6 NC_005091.1 + 8075 0.68 0.671023
Target:  5'- cGCGcACACGUucguacGGCACGagccCGCUUGCGa -3'
miRNA:   3'- uCGC-UGUGCG------UCGUGUa---GUGAACGCg -5'
22576 5' -53.6 NC_005091.1 + 9201 0.66 0.808063
Target:  5'- uGGaCGACAUacauucuCGGCACAUCGgggUUGCGCu -3'
miRNA:   3'- -UC-GCUGUGc------GUCGUGUAGUg--AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 9631 0.72 0.434251
Target:  5'- uGcCGACACgGCAGCcuCGUCACggGUGCg -3'
miRNA:   3'- uC-GCUGUG-CGUCGu-GUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 10031 0.69 0.604028
Target:  5'- cGGCGAcCACGUuGUuCAUCGCcggGCGCu -3'
miRNA:   3'- -UCGCU-GUGCGuCGuGUAGUGaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10142 0.71 0.49519
Target:  5'- cGcCGGCACGCgccgAGCGCcgCACguuccugaugUGCGCg -3'
miRNA:   3'- uC-GCUGUGCG----UCGUGuaGUGa---------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 10249 0.72 0.474419
Target:  5'- aGGCagGACACGC-GCACAUCaggaagugcggcGCUcgGCGCg -3'
miRNA:   3'- -UCG--CUGUGCGuCGUGUAG------------UGAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10918 0.77 0.240137
Target:  5'- -aUGACACGCAGCGCGuacgggucgUCGCUgccgagugcaaUGCGCg -3'
miRNA:   3'- ucGCUGUGCGUCGUGU---------AGUGA-----------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 11562 0.75 0.326659
Target:  5'- aGGUuGCACGCAGgGCAUCgaGCUgGCGCu -3'
miRNA:   3'- -UCGcUGUGCGUCgUGUAG--UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 11694 0.66 0.778365
Target:  5'- cGCGGCucucuuucaggUGUugaaGGCACGUCAgguCUUGCGCg -3'
miRNA:   3'- uCGCUGu----------GCG----UCGUGUAGU---GAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 13896 0.7 0.548772
Target:  5'- cAGCGugACGguCAGCACGaCGCUcguUGCGg -3'
miRNA:   3'- -UCGCugUGC--GUCGUGUaGUGA---ACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.