Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 14319 | 0.67 | 0.76193 |
Target: 5'- -aCGACACGCAaggcggcucgaccguGCcCGUCACgaUGCGUa -3' miRNA: 3'- ucGCUGUGCGU---------------CGuGUAGUGa-ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 14596 | 0.66 | 0.788436 |
Target: 5'- -cCGGCAUcgaGCGGCACGcUUACcgGCGCa -3' miRNA: 3'- ucGCUGUG---CGUCGUGU-AGUGaaCGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16051 | 0.71 | 0.485791 |
Target: 5'- gAGCGACAaGCAGguCAUCGCguggaacgccgcgaGCGCc -3' miRNA: 3'- -UCGCUGUgCGUCguGUAGUGaa------------CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16106 | 0.68 | 0.693169 |
Target: 5'- cGGcCGGCG-GCAGCACGaCGCUUGUcgGCc -3' miRNA: 3'- -UC-GCUGUgCGUCGUGUaGUGAACG--CG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16266 | 0.69 | 0.64761 |
Target: 5'- cGCGACgaacGCGCcgAGCACGuuccacgUCGCUUggccGCGCg -3' miRNA: 3'- uCGCUG----UGCG--UCGUGU-------AGUGAA----CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16335 | 0.69 | 0.648727 |
Target: 5'- cGCGuucguCGCgaGCGGCGCAUCGCaUGCcgGCg -3' miRNA: 3'- uCGCu----GUG--CGUCGUGUAGUGaACG--CG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 17138 | 0.66 | 0.817597 |
Target: 5'- gAGC-ACGCGCAGCGgCAUUACgUGUu- -3' miRNA: 3'- -UCGcUGUGCGUCGU-GUAGUGaACGcg -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 18118 | 0.69 | 0.59289 |
Target: 5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3' miRNA: 3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 19267 | 0.67 | 0.730207 |
Target: 5'- aGGcCGuuGCGCAGCAUGUCGCgaaacgaaagcccgUGCGa -3' miRNA: 3'- -UC-GCugUGCGUCGUGUAGUGa-------------ACGCg -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 19317 | 1.13 | 0.000777 |
Target: 5'- cAGCGACACGCAGCACAUCACUUGCGCg -3' miRNA: 3'- -UCGCUGUGCGUCGUGUAGUGAACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 20025 | 0.67 | 0.74726 |
Target: 5'- uGCGAgGCGCAGacCGCcgCGCUUGaaCGUc -3' miRNA: 3'- uCGCUgUGCGUC--GUGuaGUGAAC--GCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 20337 | 0.71 | 0.484751 |
Target: 5'- cGGCGACGCGuCGGCcgauuCgAUCACgcucgacUGCGCg -3' miRNA: 3'- -UCGCUGUGC-GUCGu----G-UAGUGa------ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 21593 | 0.76 | 0.259803 |
Target: 5'- aGGCGACGCgGCAGaGCA-CGCUUGCGg -3' miRNA: 3'- -UCGCUGUG-CGUCgUGUaGUGAACGCg -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 22143 | 0.67 | 0.757765 |
Target: 5'- aGGCGugACGCGcccGCGCAg----UGCGUa -3' miRNA: 3'- -UCGCugUGCGU---CGUGUagugaACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 22298 | 0.7 | 0.537891 |
Target: 5'- cAGCucuACGCGCAGCAguUUGCUUucuucGCGCa -3' miRNA: 3'- -UCGc--UGUGCGUCGUguAGUGAA-----CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 23350 | 0.7 | 0.537891 |
Target: 5'- gGGCGGCaugucGCGCAGUGCGUCGgcgagcuggUUUGCGa -3' miRNA: 3'- -UCGCUG-----UGCGUCGUGUAGU---------GAACGCg -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 23397 | 0.67 | 0.715071 |
Target: 5'- cAGCGcCGCcgaacagaccgaGCAGCGcCAUCGCcgcGCGCg -3' miRNA: 3'- -UCGCuGUG------------CGUCGU-GUAGUGaa-CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 23501 | 0.69 | 0.615189 |
Target: 5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3' miRNA: 3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 24410 | 0.66 | 0.798339 |
Target: 5'- cGGCGGCACGacggucgacggcCAGCcUAUCGCcgcgaucaagGCGCa -3' miRNA: 3'- -UCGCUGUGC------------GUCGuGUAGUGaa--------CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 24790 | 0.71 | 0.527086 |
Target: 5'- gAGCaGGCcaaaacacucGCGCAGCGCAaccUCGCUUcgauucGCGCg -3' miRNA: 3'- -UCG-CUG----------UGCGUCGUGU---AGUGAA------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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