miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 14319 0.67 0.76193
Target:  5'- -aCGACACGCAaggcggcucgaccguGCcCGUCACgaUGCGUa -3'
miRNA:   3'- ucGCUGUGCGU---------------CGuGUAGUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 14596 0.66 0.788436
Target:  5'- -cCGGCAUcgaGCGGCACGcUUACcgGCGCa -3'
miRNA:   3'- ucGCUGUG---CGUCGUGU-AGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 16051 0.71 0.485791
Target:  5'- gAGCGACAaGCAGguCAUCGCguggaacgccgcgaGCGCc -3'
miRNA:   3'- -UCGCUGUgCGUCguGUAGUGaa------------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 16106 0.68 0.693169
Target:  5'- cGGcCGGCG-GCAGCACGaCGCUUGUcgGCc -3'
miRNA:   3'- -UC-GCUGUgCGUCGUGUaGUGAACG--CG- -5'
22576 5' -53.6 NC_005091.1 + 16266 0.69 0.64761
Target:  5'- cGCGACgaacGCGCcgAGCACGuuccacgUCGCUUggccGCGCg -3'
miRNA:   3'- uCGCUG----UGCG--UCGUGU-------AGUGAA----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 16335 0.69 0.648727
Target:  5'- cGCGuucguCGCgaGCGGCGCAUCGCaUGCcgGCg -3'
miRNA:   3'- uCGCu----GUG--CGUCGUGUAGUGaACG--CG- -5'
22576 5' -53.6 NC_005091.1 + 17138 0.66 0.817597
Target:  5'- gAGC-ACGCGCAGCGgCAUUACgUGUu- -3'
miRNA:   3'- -UCGcUGUGCGUCGU-GUAGUGaACGcg -5'
22576 5' -53.6 NC_005091.1 + 18118 0.69 0.59289
Target:  5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3'
miRNA:   3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 19267 0.67 0.730207
Target:  5'- aGGcCGuuGCGCAGCAUGUCGCgaaacgaaagcccgUGCGa -3'
miRNA:   3'- -UC-GCugUGCGUCGUGUAGUGa-------------ACGCg -5'
22576 5' -53.6 NC_005091.1 + 19317 1.13 0.000777
Target:  5'- cAGCGACACGCAGCACAUCACUUGCGCg -3'
miRNA:   3'- -UCGCUGUGCGUCGUGUAGUGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 20025 0.67 0.74726
Target:  5'- uGCGAgGCGCAGacCGCcgCGCUUGaaCGUc -3'
miRNA:   3'- uCGCUgUGCGUC--GUGuaGUGAAC--GCG- -5'
22576 5' -53.6 NC_005091.1 + 20337 0.71 0.484751
Target:  5'- cGGCGACGCGuCGGCcgauuCgAUCACgcucgacUGCGCg -3'
miRNA:   3'- -UCGCUGUGC-GUCGu----G-UAGUGa------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 21593 0.76 0.259803
Target:  5'- aGGCGACGCgGCAGaGCA-CGCUUGCGg -3'
miRNA:   3'- -UCGCUGUG-CGUCgUGUaGUGAACGCg -5'
22576 5' -53.6 NC_005091.1 + 22143 0.67 0.757765
Target:  5'- aGGCGugACGCGcccGCGCAg----UGCGUa -3'
miRNA:   3'- -UCGCugUGCGU---CGUGUagugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 22298 0.7 0.537891
Target:  5'- cAGCucuACGCGCAGCAguUUGCUUucuucGCGCa -3'
miRNA:   3'- -UCGc--UGUGCGUCGUguAGUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23350 0.7 0.537891
Target:  5'- gGGCGGCaugucGCGCAGUGCGUCGgcgagcuggUUUGCGa -3'
miRNA:   3'- -UCGCUG-----UGCGUCGUGUAGU---------GAACGCg -5'
22576 5' -53.6 NC_005091.1 + 23397 0.67 0.715071
Target:  5'- cAGCGcCGCcgaacagaccgaGCAGCGcCAUCGCcgcGCGCg -3'
miRNA:   3'- -UCGCuGUG------------CGUCGU-GUAGUGaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23501 0.69 0.615189
Target:  5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3'
miRNA:   3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 24410 0.66 0.798339
Target:  5'- cGGCGGCACGacggucgacggcCAGCcUAUCGCcgcgaucaagGCGCa -3'
miRNA:   3'- -UCGCUGUGC------------GUCGuGUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 24790 0.71 0.527086
Target:  5'- gAGCaGGCcaaaacacucGCGCAGCGCAaccUCGCUUcgauucGCGCg -3'
miRNA:   3'- -UCG-CUG----------UGCGUCGUGU---AGUGAA------CGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.