miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 6449 0.66 0.788436
Target:  5'- cAGCGuGCGCGCuGCGCugaaggaaGCagGCGCg -3'
miRNA:   3'- -UCGC-UGUGCGuCGUGuag-----UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 39338 0.78 0.210137
Target:  5'- uAGCGACACGCAGCggcGCgAUCACgagacaGUGCu -3'
miRNA:   3'- -UCGCUGUGCGUCG---UG-UAGUGaa----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 30516 0.66 0.817597
Target:  5'- cAGCGGCGCGCucuGCGUCAUgaGCa- -3'
miRNA:   3'- -UCGCUGUGCGucgUGUAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 37793 0.66 0.8119
Target:  5'- uGGCGcuucccgcacGCGCGCAGCccuugaauccguuuCGUCACggUGCGg -3'
miRNA:   3'- -UCGC----------UGUGCGUCGu-------------GUAGUGa-ACGCg -5'
22576 5' -53.6 NC_005091.1 + 41627 0.66 0.808063
Target:  5'- cAGCGA-ACGaCAGCAUGUaCGCacGCGCc -3'
miRNA:   3'- -UCGCUgUGC-GUCGUGUA-GUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 39880 0.66 0.808063
Target:  5'- uGCGAUagaACGCGGCcgacCAUCcgGCU-GCGCc -3'
miRNA:   3'- uCGCUG---UGCGUCGu---GUAG--UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 49714 0.66 0.807099
Target:  5'- cGCGuagcucuGCAUGCggGGCACGUCgGCcgUGCGUg -3'
miRNA:   3'- uCGC-------UGUGCG--UCGUGUAG-UGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 54619 0.66 0.798339
Target:  5'- uGGCGcACAUGUc-CGCGUagGCUUGCGCc -3'
miRNA:   3'- -UCGC-UGUGCGucGUGUAg-UGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 25632 0.66 0.798339
Target:  5'- uGCGGCGgGCAGCcgAUCGCcgagcuggccGCGCa -3'
miRNA:   3'- uCGCUGUgCGUCGugUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 44198 0.66 0.788436
Target:  5'- cGCGACAgugccguaUGCGGCGuCuUCGCcUGCGUu -3'
miRNA:   3'- uCGCUGU--------GCGUCGU-GuAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 26660 0.76 0.266644
Target:  5'- cGGCGGCccgGCGUugAGCGCAUCAC--GCGCg -3'
miRNA:   3'- -UCGCUG---UGCG--UCGUGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 54955 0.66 0.778365
Target:  5'- aAGCGcCGCGCGGCuguccCGUUuucUGCGCc -3'
miRNA:   3'- -UCGCuGUGCGUCGu----GUAGugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 11694 0.66 0.778365
Target:  5'- cGCGGCucucuuucaggUGUugaaGGCACGUCAgguCUUGCGCg -3'
miRNA:   3'- uCGCUGu----------GCG----UCGUGUAGU---GAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 33223 0.66 0.768137
Target:  5'- cGGCGuaAUGCGCGGCGacCAUCuGCccGCGCa -3'
miRNA:   3'- -UCGC--UGUGCGUCGU--GUAG-UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 49279 0.66 0.768137
Target:  5'- -aCGAgGCGCAGUuCGUCggGCgUGCGCc -3'
miRNA:   3'- ucGCUgUGCGUCGuGUAG--UGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 22143 0.67 0.757765
Target:  5'- aGGCGugACGCGcccGCGCAg----UGCGUa -3'
miRNA:   3'- -UCGCugUGCGU---CGUGUagugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 35123 0.67 0.757765
Target:  5'- gAGCGGCcggucaGCAGCuugugguacGCGUCGCg-GCGCc -3'
miRNA:   3'- -UCGCUGug----CGUCG---------UGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 20025 0.67 0.74726
Target:  5'- uGCGAgGCGCAGacCGCcgCGCUUGaaCGUc -3'
miRNA:   3'- uCGCUgUGCGUC--GUGuaGUGAAC--GCG- -5'
22576 5' -53.6 NC_005091.1 + 19267 0.67 0.730207
Target:  5'- aGGcCGuuGCGCAGCAUGUCGCgaaacgaaagcccgUGCGa -3'
miRNA:   3'- -UC-GCugUGCGUCGUGUAGUGa-------------ACGCg -5'
22576 5' -53.6 NC_005091.1 + 29488 0.67 0.724822
Target:  5'- gAGCGACguaggACGCuGGCGCGcgccgaUCACagcuucgaggucgUUGCGCg -3'
miRNA:   3'- -UCGCUG-----UGCG-UCGUGU------AGUG-------------AACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.