Results 21 - 40 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 46087 | 0.66 | 0.788436 |
Target: 5'- -cCGGCGCGguGCGCGagCGCUUcuucaGCGUc -3' miRNA: 3'- ucGCUGUGCguCGUGUa-GUGAA-----CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 14596 | 0.66 | 0.788436 |
Target: 5'- -cCGGCAUcgaGCGGCACGcUUACcgGCGCa -3' miRNA: 3'- ucGCUGUG---CGUCGUGU-AGUGaaCGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 51556 | 0.66 | 0.778365 |
Target: 5'- uGCGAucCGCGCGGCA--UCGCcaagUGgGCg -3' miRNA: 3'- uCGCU--GUGCGUCGUguAGUGa---ACgCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 552 | 0.66 | 0.768137 |
Target: 5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3' miRNA: 3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 57946 | 0.66 | 0.768137 |
Target: 5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3' miRNA: 3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 9201 | 0.66 | 0.808063 |
Target: 5'- uGGaCGACAUacauucuCGGCACAUCGgggUUGCGCu -3' miRNA: 3'- -UC-GCUGUGc------GUCGUGUAGUg--AACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 14319 | 0.67 | 0.76193 |
Target: 5'- -aCGACACGCAaggcggcucgaccguGCcCGUCACgaUGCGUa -3' miRNA: 3'- ucGCUGUGCGU---------------CGuGUAGUGa-ACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 38142 | 0.67 | 0.715071 |
Target: 5'- aGGCGcaACGCGCAGgACgAUCuCUUcGUGCg -3' miRNA: 3'- -UCGC--UGUGCGUCgUG-UAGuGAA-CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 22143 | 0.67 | 0.757765 |
Target: 5'- aGGCGugACGCGcccGCGCAg----UGCGUa -3' miRNA: 3'- -UCGCugUGCGU---CGUGUagugaACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 35123 | 0.67 | 0.757765 |
Target: 5'- gAGCGGCcggucaGCAGCuugugguacGCGUCGCg-GCGCc -3' miRNA: 3'- -UCGCUGug----CGUCG---------UGUAGUGaaCGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 20025 | 0.67 | 0.74726 |
Target: 5'- uGCGAgGCGCAGacCGCcgCGCUUGaaCGUc -3' miRNA: 3'- uCGCUgUGCGUC--GUGuaGUGAAC--GCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 19267 | 0.67 | 0.730207 |
Target: 5'- aGGcCGuuGCGCAGCAUGUCGCgaaacgaaagcccgUGCGa -3' miRNA: 3'- -UC-GCugUGCGUCGUGUAGUGa-------------ACGCg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 29488 | 0.67 | 0.724822 |
Target: 5'- gAGCGACguaggACGCuGGCGCGcgccgaUCACagcuucgaggucgUUGCGCg -3' miRNA: 3'- -UCGCUG-----UGCG-UCGUGU------AGUG-------------AACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 23397 | 0.67 | 0.715071 |
Target: 5'- cAGCGcCGCcgaacagaccgaGCAGCGcCAUCGCcgcGCGCg -3' miRNA: 3'- -UCGCuGUG------------CGUCGU-GUAGUGaa-CGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 28358 | 0.67 | 0.74726 |
Target: 5'- aGGCGAagguCACGCaagccgccAGCGCGUCGCcggUUGCa- -3' miRNA: 3'- -UCGCU----GUGCG--------UCGUGUAGUG---AACGcg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 53148 | 0.67 | 0.75672 |
Target: 5'- cGCGACcaacguuACGgGGCGCAUCcugaUUGCGg -3' miRNA: 3'- uCGCUG-------UGCgUCGUGUAGug--AACGCg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 5919 | 0.68 | 0.693169 |
Target: 5'- uGCG-CACGCcGCGCAcCGCUucgagccgugcUGCGUa -3' miRNA: 3'- uCGCuGUGCGuCGUGUaGUGA-----------ACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 33433 | 0.68 | 0.703061 |
Target: 5'- cGGCGACggacgcgACGCAGCaaccgGCAUUgccgaagacccgGCUgcUGCGCa -3' miRNA: 3'- -UCGCUG-------UGCGUCG-----UGUAG------------UGA--ACGCG- -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 8075 | 0.68 | 0.671023 |
Target: 5'- cGCGcACACGUucguacGGCACGagccCGCUUGCGa -3' miRNA: 3'- uCGC-UGUGCG------UCGUGUa---GUGAACGCg -5' |
|||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 29368 | 0.68 | 0.704156 |
Target: 5'- cGGCGAaACGCuGCACGcgACggaugGCGCg -3' miRNA: 3'- -UCGCUgUGCGuCGUGUagUGaa---CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home