miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 39961 0.72 0.424519
Target:  5'- cAG-GACAUGCAGCcccuucgacGCGUCGCcgaucUUGCGCa -3'
miRNA:   3'- -UCgCUGUGCGUCG---------UGUAGUG-----AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 55716 0.72 0.424519
Target:  5'- cGgGACACGUuGCACGUCgucaucccgGCUUGcCGCa -3'
miRNA:   3'- uCgCUGUGCGuCGUGUAG---------UGAAC-GCG- -5'
22576 5' -53.6 NC_005091.1 + 32045 0.72 0.434251
Target:  5'- gAGCGACGCgaGCAGCACGUUGC---CGCc -3'
miRNA:   3'- -UCGCUGUG--CGUCGUGUAGUGaacGCG- -5'
22576 5' -53.6 NC_005091.1 + 9631 0.72 0.434251
Target:  5'- uGcCGACACgGCAGCcuCGUCACggGUGCg -3'
miRNA:   3'- uC-GCUGUG-CGUCGu-GUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 51768 0.72 0.454094
Target:  5'- cGCGACucGCGCAGCAUcgCAUccGCGa -3'
miRNA:   3'- uCGCUG--UGCGUCGUGuaGUGaaCGCg -5'
22576 5' -53.6 NC_005091.1 + 1133 0.72 0.464199
Target:  5'- uGCGugGCGUgaaGGCGCAUUACgcuaacugGCGUg -3'
miRNA:   3'- uCGCugUGCG---UCGUGUAGUGaa------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10249 0.72 0.474419
Target:  5'- aGGCagGACACGC-GCACAUCaggaagugcggcGCUcgGCGCg -3'
miRNA:   3'- -UCG--CUGUGCGuCGUGUAG------------UGAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 20337 0.71 0.484751
Target:  5'- cGGCGACGCGuCGGCcgauuCgAUCACgcucgacUGCGCg -3'
miRNA:   3'- -UCGCUGUGC-GUCGu----G-UAGUGa------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 16051 0.71 0.485791
Target:  5'- gAGCGACAaGCAGguCAUCGCguggaacgccgcgaGCGCc -3'
miRNA:   3'- -UCGCUGUgCGUCguGUAGUGaa------------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10142 0.71 0.49519
Target:  5'- cGcCGGCACGCgccgAGCGCcgCACguuccugaugUGCGCg -3'
miRNA:   3'- uC-GCUGUGCG----UCGUGuaGUGa---------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 33514 0.71 0.516363
Target:  5'- gAGCuuCGCGCAGCGCGcUCGCgagGaCGCc -3'
miRNA:   3'- -UCGcuGUGCGUCGUGU-AGUGaa-C-GCG- -5'
22576 5' -53.6 NC_005091.1 + 37573 0.71 0.516363
Target:  5'- gAGCGACAaGCAGCGCGccaUCAUU--CGCa -3'
miRNA:   3'- -UCGCUGUgCGUCGUGU---AGUGAacGCG- -5'
22576 5' -53.6 NC_005091.1 + 24790 0.71 0.527086
Target:  5'- gAGCaGGCcaaaacacucGCGCAGCGCAaccUCGCUUcgauucGCGCg -3'
miRNA:   3'- -UCG-CUG----------UGCGUCGUGU---AGUGAA------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33820 0.71 0.527086
Target:  5'- cGCGAUgACGCGGCGCuuccUCGaaggGCGCa -3'
miRNA:   3'- uCGCUG-UGCGUCGUGu---AGUgaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 22298 0.7 0.537891
Target:  5'- cAGCucuACGCGCAGCAguUUGCUUucuucGCGCa -3'
miRNA:   3'- -UCGc--UGUGCGUCGUguAGUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23350 0.7 0.537891
Target:  5'- gGGCGGCaugucGCGCAGUGCGUCGgcgagcuggUUUGCGa -3'
miRNA:   3'- -UCGCUG-----UGCGUCGUGUAGU---------GAACGCg -5'
22576 5' -53.6 NC_005091.1 + 51595 0.7 0.548772
Target:  5'- --gGGCGCGCagaAGCGCggCACggGCGCg -3'
miRNA:   3'- ucgCUGUGCG---UCGUGuaGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 13896 0.7 0.548772
Target:  5'- cAGCGugACGguCAGCACGaCGCUcguUGCGg -3'
miRNA:   3'- -UCGCugUGC--GUCGUGUaGUGA---ACGCg -5'
22576 5' -53.6 NC_005091.1 + 55829 0.7 0.557525
Target:  5'- cGCGACGaagaGCGGCGCAgccggucagcaACUgGCGCa -3'
miRNA:   3'- uCGCUGUg---CGUCGUGUag---------UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 50945 0.7 0.559719
Target:  5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3'
miRNA:   3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.