miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 54955 0.66 0.778365
Target:  5'- aAGCGcCGCGCGGCuguccCGUUuucUGCGCc -3'
miRNA:   3'- -UCGCuGUGCGUCGu----GUAGugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 11694 0.66 0.778365
Target:  5'- cGCGGCucucuuucaggUGUugaaGGCACGUCAgguCUUGCGCg -3'
miRNA:   3'- uCGCUGu----------GCG----UCGUGUAGU---GAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 33223 0.66 0.768137
Target:  5'- cGGCGuaAUGCGCGGCGacCAUCuGCccGCGCa -3'
miRNA:   3'- -UCGC--UGUGCGUCGU--GUAG-UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 49279 0.66 0.768137
Target:  5'- -aCGAgGCGCAGUuCGUCggGCgUGCGCc -3'
miRNA:   3'- ucGCUgUGCGUCGuGUAG--UGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 552 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 57946 0.66 0.768137
Target:  5'- --gGACG-GCGGCuuGUCGCcUGCGCg -3'
miRNA:   3'- ucgCUGUgCGUCGugUAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 14319 0.67 0.76193
Target:  5'- -aCGACACGCAaggcggcucgaccguGCcCGUCACgaUGCGUa -3'
miRNA:   3'- ucGCUGUGCGU---------------CGuGUAGUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 22143 0.67 0.757765
Target:  5'- aGGCGugACGCGcccGCGCAg----UGCGUa -3'
miRNA:   3'- -UCGCugUGCGU---CGUGUagugaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 35123 0.67 0.757765
Target:  5'- gAGCGGCcggucaGCAGCuugugguacGCGUCGCg-GCGCc -3'
miRNA:   3'- -UCGCUGug----CGUCG---------UGUAGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 53148 0.67 0.75672
Target:  5'- cGCGACcaacguuACGgGGCGCAUCcugaUUGCGg -3'
miRNA:   3'- uCGCUG-------UGCgUCGUGUAGug--AACGCg -5'
22576 5' -53.6 NC_005091.1 + 28358 0.67 0.74726
Target:  5'- aGGCGAagguCACGCaagccgccAGCGCGUCGCcggUUGCa- -3'
miRNA:   3'- -UCGCU----GUGCG--------UCGUGUAGUG---AACGcg -5'
22576 5' -53.6 NC_005091.1 + 20025 0.67 0.74726
Target:  5'- uGCGAgGCGCAGacCGCcgCGCUUGaaCGUc -3'
miRNA:   3'- uCGCUgUGCGUC--GUGuaGUGAAC--GCG- -5'
22576 5' -53.6 NC_005091.1 + 19267 0.67 0.730207
Target:  5'- aGGcCGuuGCGCAGCAUGUCGCgaaacgaaagcccgUGCGa -3'
miRNA:   3'- -UC-GCugUGCGUCGUGUAGUGa-------------ACGCg -5'
22576 5' -53.6 NC_005091.1 + 29488 0.67 0.724822
Target:  5'- gAGCGACguaggACGCuGGCGCGcgccgaUCACagcuucgaggucgUUGCGCg -3'
miRNA:   3'- -UCGCUG-----UGCG-UCGUGU------AGUG-------------AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 38142 0.67 0.715071
Target:  5'- aGGCGcaACGCGCAGgACgAUCuCUUcGUGCg -3'
miRNA:   3'- -UCGC--UGUGCGUCgUG-UAGuGAA-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23397 0.67 0.715071
Target:  5'- cAGCGcCGCcgaacagaccgaGCAGCGcCAUCGCcgcGCGCg -3'
miRNA:   3'- -UCGCuGUG------------CGUCGU-GUAGUGaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 52115 0.68 0.704156
Target:  5'- aGGCGGCcguCGcCGGCGCGgggCGCgUUGCGg -3'
miRNA:   3'- -UCGCUGu--GC-GUCGUGUa--GUG-AACGCg -5'
22576 5' -53.6 NC_005091.1 + 48671 0.68 0.704156
Target:  5'- cGUGAUACagGCAuGC-CGUCAUgcgUGCGCa -3'
miRNA:   3'- uCGCUGUG--CGU-CGuGUAGUGa--ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 29368 0.68 0.704156
Target:  5'- cGGCGAaACGCuGCACGcgACggaugGCGCg -3'
miRNA:   3'- -UCGCUgUGCGuCGUGUagUGaa---CGCG- -5'
22576 5' -53.6 NC_005091.1 + 33433 0.68 0.703061
Target:  5'- cGGCGACggacgcgACGCAGCaaccgGCAUUgccgaagacccgGCUgcUGCGCa -3'
miRNA:   3'- -UCGCUG-------UGCGUCG-----UGUAG------------UGA--ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.