Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22576 | 5' | -53.6 | NC_005091.1 | + | 16106 | 0.68 | 0.693169 |
Target: 5'- cGGcCGGCG-GCAGCACGaCGCUUGUcgGCc -3' miRNA: 3'- -UC-GCUGUgCGUCGUGUaGUGAACG--CG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 5919 | 0.68 | 0.693169 |
Target: 5'- uGCG-CACGCcGCGCAcCGCUucgagccgugcUGCGUa -3' miRNA: 3'- uCGCuGUGCGuCGUGUaGUGA-----------ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 36391 | 0.68 | 0.671023 |
Target: 5'- gGGuCGGCACGCcGCGa--CGCUcGCGCa -3' miRNA: 3'- -UC-GCUGUGCGuCGUguaGUGAaCGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 8075 | 0.68 | 0.671023 |
Target: 5'- cGCGcACACGUucguacGGCACGagccCGCUUGCGa -3' miRNA: 3'- uCGC-UGUGCG------UCGUGUa---GUGAACGCg -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 39711 | 0.68 | 0.659888 |
Target: 5'- aAGCGACAC-CAGUACAacaagCACgacgagaUGCGUc -3' miRNA: 3'- -UCGCUGUGcGUCGUGUa----GUGa------ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 6802 | 0.68 | 0.659888 |
Target: 5'- -cCGACGCGCAGCucgcgcucuacuACAUCACggaaaacCGCa -3' miRNA: 3'- ucGCUGUGCGUCG------------UGUAGUGaac----GCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 51317 | 0.68 | 0.659888 |
Target: 5'- cGGCGuuACGCGGUugAUaccgUACagUGCGCg -3' miRNA: 3'- -UCGCugUGCGUCGugUA----GUGa-ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16335 | 0.69 | 0.648727 |
Target: 5'- cGCGuucguCGCgaGCGGCGCAUCGCaUGCcgGCg -3' miRNA: 3'- uCGCu----GUG--CGUCGUGUAGUGaACG--CG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 16266 | 0.69 | 0.64761 |
Target: 5'- cGCGACgaacGCGCcgAGCACGuuccacgUCGCUUggccGCGCg -3' miRNA: 3'- uCGCUG----UGCG--UCGUGU-------AGUGAA----CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 32207 | 0.69 | 0.626367 |
Target: 5'- uGCGGCG-GCAGCgaGCAUCAcCUUcGCGUc -3' miRNA: 3'- uCGCUGUgCGUCG--UGUAGU-GAA-CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 44285 | 0.69 | 0.626367 |
Target: 5'- aGGCGAagACGCcGCAUAcggCACUgucGCGCa -3' miRNA: 3'- -UCGCUg-UGCGuCGUGUa--GUGAa--CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 23501 | 0.69 | 0.615189 |
Target: 5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3' miRNA: 3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 10031 | 0.69 | 0.604028 |
Target: 5'- cGGCGAcCACGUuGUuCAUCGCcggGCGCu -3' miRNA: 3'- -UCGCU-GUGCGuCGuGUAGUGaa-CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 53569 | 0.69 | 0.604028 |
Target: 5'- uGGCGACacgauACGCGGUGuCGUCuuccGCUUGcCGCa -3' miRNA: 3'- -UCGCUG-----UGCGUCGU-GUAG----UGAAC-GCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 18118 | 0.69 | 0.59289 |
Target: 5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3' miRNA: 3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 41967 | 0.69 | 0.59289 |
Target: 5'- cGCGAgGucgaGCAGCACGUCGCcgUG-GCa -3' miRNA: 3'- uCGCUgUg---CGUCGUGUAGUGa-ACgCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 5295 | 0.69 | 0.59289 |
Target: 5'- gGGCGGC-CGUuGCACuccuugCACcgUGCGCg -3' miRNA: 3'- -UCGCUGuGCGuCGUGua----GUGa-ACGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 34436 | 0.69 | 0.59289 |
Target: 5'- cGCGGCGUGCAGUACGaCAa--GCGCg -3' miRNA: 3'- uCGCUGUGCGUCGUGUaGUgaaCGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 51428 | 0.69 | 0.589555 |
Target: 5'- cGCGACugcacGCGCAGCGucgacagccccgguCGUCGCUUcCGCc -3' miRNA: 3'- uCGCUG-----UGCGUCGU--------------GUAGUGAAcGCG- -5' |
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22576 | 5' | -53.6 | NC_005091.1 | + | 50945 | 0.7 | 0.559719 |
Target: 5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3' miRNA: 3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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