miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 16106 0.68 0.693169
Target:  5'- cGGcCGGCG-GCAGCACGaCGCUUGUcgGCc -3'
miRNA:   3'- -UC-GCUGUgCGUCGUGUaGUGAACG--CG- -5'
22576 5' -53.6 NC_005091.1 + 5919 0.68 0.693169
Target:  5'- uGCG-CACGCcGCGCAcCGCUucgagccgugcUGCGUa -3'
miRNA:   3'- uCGCuGUGCGuCGUGUaGUGA-----------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 36391 0.68 0.671023
Target:  5'- gGGuCGGCACGCcGCGa--CGCUcGCGCa -3'
miRNA:   3'- -UC-GCUGUGCGuCGUguaGUGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 8075 0.68 0.671023
Target:  5'- cGCGcACACGUucguacGGCACGagccCGCUUGCGa -3'
miRNA:   3'- uCGC-UGUGCG------UCGUGUa---GUGAACGCg -5'
22576 5' -53.6 NC_005091.1 + 39711 0.68 0.659888
Target:  5'- aAGCGACAC-CAGUACAacaagCACgacgagaUGCGUc -3'
miRNA:   3'- -UCGCUGUGcGUCGUGUa----GUGa------ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 6802 0.68 0.659888
Target:  5'- -cCGACGCGCAGCucgcgcucuacuACAUCACggaaaacCGCa -3'
miRNA:   3'- ucGCUGUGCGUCG------------UGUAGUGaac----GCG- -5'
22576 5' -53.6 NC_005091.1 + 51317 0.68 0.659888
Target:  5'- cGGCGuuACGCGGUugAUaccgUACagUGCGCg -3'
miRNA:   3'- -UCGCugUGCGUCGugUA----GUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 16335 0.69 0.648727
Target:  5'- cGCGuucguCGCgaGCGGCGCAUCGCaUGCcgGCg -3'
miRNA:   3'- uCGCu----GUG--CGUCGUGUAGUGaACG--CG- -5'
22576 5' -53.6 NC_005091.1 + 16266 0.69 0.64761
Target:  5'- cGCGACgaacGCGCcgAGCACGuuccacgUCGCUUggccGCGCg -3'
miRNA:   3'- uCGCUG----UGCG--UCGUGU-------AGUGAA----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 32207 0.69 0.626367
Target:  5'- uGCGGCG-GCAGCgaGCAUCAcCUUcGCGUc -3'
miRNA:   3'- uCGCUGUgCGUCG--UGUAGU-GAA-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 44285 0.69 0.626367
Target:  5'- aGGCGAagACGCcGCAUAcggCACUgucGCGCa -3'
miRNA:   3'- -UCGCUg-UGCGuCGUGUa--GUGAa--CGCG- -5'
22576 5' -53.6 NC_005091.1 + 23501 0.69 0.615189
Target:  5'- uGGCGACGCGCgcggcgauGGCGCugcucgGUCugUUcggcgGCGCu -3'
miRNA:   3'- -UCGCUGUGCG--------UCGUG------UAGugAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 10031 0.69 0.604028
Target:  5'- cGGCGAcCACGUuGUuCAUCGCcggGCGCu -3'
miRNA:   3'- -UCGCU-GUGCGuCGuGUAGUGaa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 53569 0.69 0.604028
Target:  5'- uGGCGACacgauACGCGGUGuCGUCuuccGCUUGcCGCa -3'
miRNA:   3'- -UCGCUG-----UGCGUCGU-GUAG----UGAAC-GCG- -5'
22576 5' -53.6 NC_005091.1 + 18118 0.69 0.59289
Target:  5'- uGCGGCACGCugaucgagaaCACGUCGgUcgGCGCg -3'
miRNA:   3'- uCGCUGUGCGuc--------GUGUAGUgAa-CGCG- -5'
22576 5' -53.6 NC_005091.1 + 41967 0.69 0.59289
Target:  5'- cGCGAgGucgaGCAGCACGUCGCcgUG-GCa -3'
miRNA:   3'- uCGCUgUg---CGUCGUGUAGUGa-ACgCG- -5'
22576 5' -53.6 NC_005091.1 + 5295 0.69 0.59289
Target:  5'- gGGCGGC-CGUuGCACuccuugCACcgUGCGCg -3'
miRNA:   3'- -UCGCUGuGCGuCGUGua----GUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 34436 0.69 0.59289
Target:  5'- cGCGGCGUGCAGUACGaCAa--GCGCg -3'
miRNA:   3'- uCGCUGUGCGUCGUGUaGUgaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 51428 0.69 0.589555
Target:  5'- cGCGACugcacGCGCAGCGucgacagccccgguCGUCGCUUcCGCc -3'
miRNA:   3'- uCGCUG-----UGCGUCGU--------------GUAGUGAAcGCG- -5'
22576 5' -53.6 NC_005091.1 + 50945 0.7 0.559719
Target:  5'- cAGCGAC-CGCaAGCGCGg----UGCGCa -3'
miRNA:   3'- -UCGCUGuGCG-UCGUGUagugaACGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.