miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22578 5' -48.2 NC_005091.1 + 2877 0.66 0.984788
Target:  5'- -cUCUCGCGaaCGGCAGCcCGAgCGCu -3'
miRNA:   3'- caAGGGCGUaaGCUGUUGaGUUaGCG- -5'
22578 5' -48.2 NC_005091.1 + 989 0.66 0.982696
Target:  5'- -gUCCCGCAggccugcUCGACGcgggcgcgcuGCUCGG-CGUc -3'
miRNA:   3'- caAGGGCGUa------AGCUGU----------UGAGUUaGCG- -5'
22578 5' -48.2 NC_005091.1 + 21382 0.66 0.980395
Target:  5'- --cCUCGCGUacgCGGCGGCgaAGUCGCu -3'
miRNA:   3'- caaGGGCGUAa--GCUGUUGagUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 11671 0.66 0.980395
Target:  5'- --gCCgGCcUUCaGCGGCUCGAUgGCg -3'
miRNA:   3'- caaGGgCGuAAGcUGUUGAGUUAgCG- -5'
22578 5' -48.2 NC_005091.1 + 36537 0.66 0.980395
Target:  5'- cUUCCaGUA-UCGACGGCgaCGGUCGCc -3'
miRNA:   3'- cAAGGgCGUaAGCUGUUGa-GUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 36595 0.67 0.975119
Target:  5'- aGUgCCCGCAcugCGGCGACUgGuUCGa -3'
miRNA:   3'- -CAaGGGCGUaa-GCUGUUGAgUuAGCg -5'
22578 5' -48.2 NC_005091.1 + 27544 0.67 0.972124
Target:  5'- cUUCCCGaccaGUUCGGgGGCgUCAcgCGUc -3'
miRNA:   3'- cAAGGGCg---UAAGCUgUUG-AGUuaGCG- -5'
22578 5' -48.2 NC_005091.1 + 22061 0.67 0.97181
Target:  5'- --aCCCGCGUcggUCGACAguGCcggCAauguaucGUCGCg -3'
miRNA:   3'- caaGGGCGUA---AGCUGU--UGa--GU-------UAGCG- -5'
22578 5' -48.2 NC_005091.1 + 36704 0.67 0.968877
Target:  5'- --gUCCGC-UUCGACGcgaggucgaacgGCUCGccGUCGCc -3'
miRNA:   3'- caaGGGCGuAAGCUGU------------UGAGU--UAGCG- -5'
22578 5' -48.2 NC_005091.1 + 38739 0.67 0.965369
Target:  5'- cGUUCUCGCAUccCGgccGCAGCUUGuacguUCGCg -3'
miRNA:   3'- -CAAGGGCGUAa-GC---UGUUGAGUu----AGCG- -5'
22578 5' -48.2 NC_005091.1 + 32352 0.67 0.961593
Target:  5'- ---aCgGCGUUCGGCGGC-CAGUUGUu -3'
miRNA:   3'- caagGgCGUAAGCUGUUGaGUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 19903 0.68 0.95754
Target:  5'- --aCCCGCc-UCGGCGcACUCGAaccaaUCGCc -3'
miRNA:   3'- caaGGGCGuaAGCUGU-UGAGUU-----AGCG- -5'
22578 5' -48.2 NC_005091.1 + 2083 0.68 0.95754
Target:  5'- cGUUCgCCaGCAUggccgCGACAGCgUCGAUgUGCg -3'
miRNA:   3'- -CAAG-GG-CGUAa----GCUGUUG-AGUUA-GCG- -5'
22578 5' -48.2 NC_005091.1 + 17379 0.68 0.953204
Target:  5'- uGUUCugCCGCg--CGACGAuCUCGAUUGUg -3'
miRNA:   3'- -CAAG--GGCGuaaGCUGUU-GAGUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 51437 0.68 0.94858
Target:  5'- --aCgCGCAgcgUCGACAGCccCGGUCGUc -3'
miRNA:   3'- caaGgGCGUa--AGCUGUUGa-GUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 3033 0.68 0.94858
Target:  5'- --gCCCGCAgagCGAgAACgCGAUuCGCg -3'
miRNA:   3'- caaGGGCGUaa-GCUgUUGaGUUA-GCG- -5'
22578 5' -48.2 NC_005091.1 + 5421 0.68 0.938447
Target:  5'- aGUUCCUGCGgcagCG-CGAC-CGGUUGCu -3'
miRNA:   3'- -CAAGGGCGUaa--GCuGUUGaGUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 50779 0.69 0.932932
Target:  5'- --aCaaGCAUggCGAC-GCUCAAUCGCc -3'
miRNA:   3'- caaGggCGUAa-GCUGuUGAGUUAGCG- -5'
22578 5' -48.2 NC_005091.1 + 34589 0.69 0.927117
Target:  5'- -aUUCCGCGU---ACAGCUCGAacuUCGCu -3'
miRNA:   3'- caAGGGCGUAagcUGUUGAGUU---AGCG- -5'
22578 5' -48.2 NC_005091.1 + 29244 0.69 0.926518
Target:  5'- --gCCCGUauagcagguagacGUuguUCGACAGCUUcGUCGCg -3'
miRNA:   3'- caaGGGCG-------------UA---AGCUGUUGAGuUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.