miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22579 5' -56.7 NC_005091.1 + 24891 0.66 0.596858
Target:  5'- gGCUUccuCGGCgGCCUGCGCaGCAc-- -3'
miRNA:   3'- aCGAGc--GUUGgCGGACGCGaCGUuaa -5'
22579 5' -56.7 NC_005091.1 + 54947 0.66 0.596858
Target:  5'- cGCUCGcCAAgCGCC-GCGCgGCu--- -3'
miRNA:   3'- aCGAGC-GUUgGCGGaCGCGaCGuuaa -5'
22579 5' -56.7 NC_005091.1 + 49824 0.66 0.585758
Target:  5'- cGUUCGUGGCgGCUUGCGCguugaGCGc-- -3'
miRNA:   3'- aCGAGCGUUGgCGGACGCGa----CGUuaa -5'
22579 5' -56.7 NC_005091.1 + 46355 0.66 0.575802
Target:  5'- aGC-CGCcgaaaaAACCGCCgaagaaacgauggucGCGCUGCAAa- -3'
miRNA:   3'- aCGaGCG------UUGGCGGa--------------CGCGACGUUaa -5'
22579 5' -56.7 NC_005091.1 + 26437 0.66 0.563686
Target:  5'- cGCgCGCgGGCCGCCgGgGCUGCc--- -3'
miRNA:   3'- aCGaGCG-UUGGCGGaCgCGACGuuaa -5'
22579 5' -56.7 NC_005091.1 + 52652 0.67 0.541842
Target:  5'- cUGUUCGUuACCGCgUGCGUcGCGc-- -3'
miRNA:   3'- -ACGAGCGuUGGCGgACGCGaCGUuaa -5'
22579 5' -56.7 NC_005091.1 + 22736 0.67 0.531024
Target:  5'- aGCUCGUuccGCCGCCggccgucaGCGCgGCGu-- -3'
miRNA:   3'- aCGAGCGu--UGGCGGa-------CGCGaCGUuaa -5'
22579 5' -56.7 NC_005091.1 + 55930 0.67 0.520285
Target:  5'- aGCUCGUgcgccaguugcuGACCGgCUGCGCcGCu--- -3'
miRNA:   3'- aCGAGCG------------UUGGCgGACGCGaCGuuaa -5'
22579 5' -56.7 NC_005091.1 + 20998 0.67 0.513883
Target:  5'- aGCUUGCAucagGCCGCUUGCGauugaguugucgaaUGCGGg- -3'
miRNA:   3'- aCGAGCGU----UGGCGGACGCg-------------ACGUUaa -5'
22579 5' -56.7 NC_005091.1 + 39162 0.67 0.509633
Target:  5'- uUGCUUGCGGCCGUCgucgccucGUGUUGUGAa- -3'
miRNA:   3'- -ACGAGCGUUGGCGGa-------CGCGACGUUaa -5'
22579 5' -56.7 NC_005091.1 + 53690 0.67 0.499074
Target:  5'- aUGCUCGCaAACCGUUucggcaUGCG-UGCGAUg -3'
miRNA:   3'- -ACGAGCG-UUGGCGG------ACGCgACGUUAa -5'
22579 5' -56.7 NC_005091.1 + 51993 0.67 0.488613
Target:  5'- aGCUCGCGAUgGUCgGCGCUacgGCGu-- -3'
miRNA:   3'- aCGAGCGUUGgCGGaCGCGA---CGUuaa -5'
22579 5' -56.7 NC_005091.1 + 1109 0.68 0.457874
Target:  5'- gGCUCGCGAUCGacacgcaucuCCUGCGUgGCGu-- -3'
miRNA:   3'- aCGAGCGUUGGC----------GGACGCGaCGUuaa -5'
22579 5' -56.7 NC_005091.1 + 56012 0.68 0.4282
Target:  5'- uUGUUucaucUGC-GCCGCCUGCGCacGCAGUUg -3'
miRNA:   3'- -ACGA-----GCGuUGGCGGACGCGa-CGUUAA- -5'
22579 5' -56.7 NC_005091.1 + 49877 0.68 0.4282
Target:  5'- gGCaUCGuCGGCC-CCUGCGgUGCGGUg -3'
miRNA:   3'- aCG-AGC-GUUGGcGGACGCgACGUUAa -5'
22579 5' -56.7 NC_005091.1 + 53414 0.69 0.40906
Target:  5'- gGCUCGUAGCCGa--GCGUUGUAGa- -3'
miRNA:   3'- aCGAGCGUUGGCggaCGCGACGUUaa -5'
22579 5' -56.7 NC_005091.1 + 26173 0.69 0.408117
Target:  5'- uUGCUCGaauGCCGUucgccugcugagaCUGCGCUGUGAg- -3'
miRNA:   3'- -ACGAGCgu-UGGCG-------------GACGCGACGUUaa -5'
22579 5' -56.7 NC_005091.1 + 33258 0.69 0.390463
Target:  5'- aGCUCGCGGCgGCCgauaacGCGCU-CGAa- -3'
miRNA:   3'- aCGAGCGUUGgCGGa-----CGCGAcGUUaa -5'
22579 5' -56.7 NC_005091.1 + 34556 0.69 0.381374
Target:  5'- gUGCUgGCGACUGCCgagugggaccGCGCgGCGAa- -3'
miRNA:   3'- -ACGAgCGUUGGCGGa---------CGCGaCGUUaa -5'
22579 5' -56.7 NC_005091.1 + 26404 0.7 0.372427
Target:  5'- cUGCUgCgGCAGCCgcaGCCUGCGUUGCc--- -3'
miRNA:   3'- -ACGA-G-CGUUGG---CGGACGCGACGuuaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.