miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22580 5' -59.9 NC_005091.1 + 45789 0.66 0.480678
Target:  5'- -uAGCCGGcgcGGCG-CGCGGCcgacgcguacaGGAGC-Ca -3'
miRNA:   3'- guUCGGCU---CCGCuGCGCCG-----------UCUCGuG- -5'
22580 5' -59.9 NC_005091.1 + 52794 0.66 0.480678
Target:  5'- --cGCgGcGGCGAucaggccgcaCGCGGCAGcAGCAUc -3'
miRNA:   3'- guuCGgCuCCGCU----------GCGCCGUC-UCGUG- -5'
22580 5' -59.9 NC_005091.1 + 23379 0.66 0.477702
Target:  5'- -cAGCCGGGGCagccGACGCaGCGccgccgaacagaccGAGCAg -3'
miRNA:   3'- guUCGGCUCCG----CUGCGcCGU--------------CUCGUg -5'
22580 5' -59.9 NC_005091.1 + 41202 0.66 0.474736
Target:  5'- --cGCCGAacacaaggacgaaccGGUgcuGACGgGGCGGuGCACg -3'
miRNA:   3'- guuCGGCU---------------CCG---CUGCgCCGUCuCGUG- -5'
22580 5' -59.9 NC_005091.1 + 1265 0.66 0.470795
Target:  5'- aAGGCUGGGGCGAauacCGGCAG-GUg- -3'
miRNA:   3'- gUUCGGCUCCGCUgc--GCCGUCuCGug -5'
22580 5' -59.9 NC_005091.1 + 42266 0.66 0.461017
Target:  5'- --uGCCGGGGCGAacaaccuaCGCGGaGGAaucggaaccGCGCa -3'
miRNA:   3'- guuCGGCUCCGCU--------GCGCCgUCU---------CGUG- -5'
22580 5' -59.9 NC_005091.1 + 30245 0.66 0.451348
Target:  5'- aAGGCCGGGGCGuCGaagcCGGCGaAGCcccGCg -3'
miRNA:   3'- gUUCGGCUCCGCuGC----GCCGUcUCG---UG- -5'
22580 5' -59.9 NC_005091.1 + 33964 0.66 0.451348
Target:  5'- gAAGCCGAuggguacgccgGGCGGCGuCGGUAGcgaauucgaGGCGu -3'
miRNA:   3'- gUUCGGCU-----------CCGCUGC-GCCGUC---------UCGUg -5'
22580 5' -59.9 NC_005091.1 + 50811 0.66 0.441791
Target:  5'- -cGGCCGucGUGcGCGCGGCuauccGGAGCGg -3'
miRNA:   3'- guUCGGCucCGC-UGCGCCG-----UCUCGUg -5'
22580 5' -59.9 NC_005091.1 + 11477 0.66 0.441791
Target:  5'- gCAGGCCGAagcgcaGcGUGACGCGGCcGA-CGCc -3'
miRNA:   3'- -GUUCGGCU------C-CGCUGCGCCGuCUcGUG- -5'
22580 5' -59.9 NC_005091.1 + 7834 0.66 0.441791
Target:  5'- aCAAGCCGAugaaGGCGAUGaccucgaagcaGGCccauGAGUACc -3'
miRNA:   3'- -GUUCGGCU----CCGCUGCg----------CCGu---CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 34052 0.66 0.432349
Target:  5'- --cGCUGaAGGCGuACGuCGGCGGuGCGa -3'
miRNA:   3'- guuCGGC-UCCGC-UGC-GCCGUCuCGUg -5'
22580 5' -59.9 NC_005091.1 + 4053 0.67 0.423952
Target:  5'- cCAAGCCGgauucAGGCGGggcguuucucaccauCGUGGCGGccgcuucgagagcaAGCGCg -3'
miRNA:   3'- -GUUCGGC-----UCCGCU---------------GCGCCGUC--------------UCGUG- -5'
22580 5' -59.9 NC_005091.1 + 54729 0.67 0.423026
Target:  5'- gGGGCCG-GGCcaaaGCGGCAcGGCAUg -3'
miRNA:   3'- gUUCGGCuCCGcug-CGCCGUcUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 12096 0.67 0.403847
Target:  5'- gCGAGCCGGGccugcuugaugauGCGGaaCGGCAcggcGAGCACg -3'
miRNA:   3'- -GUUCGGCUC-------------CGCUgcGCCGU----CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 7471 0.67 0.395797
Target:  5'- gCAGGCCGAGaaGACGa---AGAGCACg -3'
miRNA:   3'- -GUUCGGCUCcgCUGCgccgUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 39258 0.67 0.395797
Target:  5'- uCGGGCCuucacaacacGAGGCGACGaCGGCcgcaAGCAa -3'
miRNA:   3'- -GUUCGG----------CUCCGCUGC-GCCGuc--UCGUg -5'
22580 5' -59.9 NC_005091.1 + 48589 0.67 0.395797
Target:  5'- --cGgCGAGGCGcgaaugGCGGgAGGGCGCa -3'
miRNA:   3'- guuCgGCUCCGCug----CGCCgUCUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 51584 0.67 0.394909
Target:  5'- --cGUCGcgugacGGGCGcgcagaaGCGCGGCAcGGGCGCg -3'
miRNA:   3'- guuCGGC------UCCGC-------UGCGCCGU-CUCGUG- -5'
22580 5' -59.9 NC_005091.1 + 44886 0.67 0.386975
Target:  5'- gCAGGCgGuacGGGCGGCGgcaaGGCGGccgaaGGCACg -3'
miRNA:   3'- -GUUCGgC---UCCGCUGCg---CCGUC-----UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.