miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22581 5' -50.7 NC_005091.1 + 333 0.66 0.921474
Target:  5'- cGAGAUCGuCCGCGUG-CUGACcaucaACGGc -3'
miRNA:   3'- -CUCUAGUuGGUGUACuGGCUG-----UGCUu -5'
22581 5' -50.7 NC_005091.1 + 57727 0.66 0.921474
Target:  5'- cGAGAUCGuCCGCGUG-CUGACcaucaACGGc -3'
miRNA:   3'- -CUCUAGUuGGUGUACuGGCUG-----UGCUu -5'
22581 5' -50.7 NC_005091.1 + 31791 0.66 0.915111
Target:  5'- cGGcgCAGCCGaaggcGGCCGGCGCGGc -3'
miRNA:   3'- cUCuaGUUGGUgua--CUGGCUGUGCUu -5'
22581 5' -50.7 NC_005091.1 + 5239 0.66 0.915111
Target:  5'- cGGAUCAcaucacugGCCGCAcGGCCGuuGCGGu -3'
miRNA:   3'- cUCUAGU--------UGGUGUaCUGGCugUGCUu -5'
22581 5' -50.7 NC_005091.1 + 17907 0.66 0.915111
Target:  5'- cGAGAUCAcgauacgucGCCucgguCGUGcgguagacgGCCGGCGCGAc -3'
miRNA:   3'- -CUCUAGU---------UGGu----GUAC---------UGGCUGUGCUu -5'
22581 5' -50.7 NC_005091.1 + 13909 0.66 0.908452
Target:  5'- -uGGUUgAACCGCAgcuUGuACCGGCGCGAc -3'
miRNA:   3'- cuCUAG-UUGGUGU---AC-UGGCUGUGCUu -5'
22581 5' -50.7 NC_005091.1 + 39958 0.67 0.878912
Target:  5'- -uGGUCGGCCGCGUucuaucgcaagGACUGACGUGAAg -3'
miRNA:   3'- cuCUAGUUGGUGUA-----------CUGGCUGUGCUU- -5'
22581 5' -50.7 NC_005091.1 + 52194 0.67 0.870826
Target:  5'- -cGAUgAcuuCCAaAUGGCCGACACGGAc -3'
miRNA:   3'- cuCUAgUu--GGUgUACUGGCUGUGCUU- -5'
22581 5' -50.7 NC_005091.1 + 52981 0.67 0.870826
Target:  5'- -cGAUCAGCgAaccccgcacCAUGACCGGCGCa-- -3'
miRNA:   3'- cuCUAGUUGgU---------GUACUGGCUGUGcuu -5'
22581 5' -50.7 NC_005091.1 + 27984 0.67 0.862472
Target:  5'- -uGAUCuGAUCGCc-GGCCGACACGAc -3'
miRNA:   3'- cuCUAG-UUGGUGuaCUGGCUGUGCUu -5'
22581 5' -50.7 NC_005091.1 + 30291 0.68 0.853859
Target:  5'- cGAGGUCGAagaCGCcccGGCCGGCgACGAAg -3'
miRNA:   3'- -CUCUAGUUg--GUGua-CUGGCUG-UGCUU- -5'
22581 5' -50.7 NC_005091.1 + 11431 0.68 0.853859
Target:  5'- -cGG-CGGCCACGUcGGCCGACGCu-- -3'
miRNA:   3'- cuCUaGUUGGUGUA-CUGGCUGUGcuu -5'
22581 5' -50.7 NC_005091.1 + 18001 0.68 0.844995
Target:  5'- --cGUCuACCGCAcGACCGAgGCGAc -3'
miRNA:   3'- cucUAGuUGGUGUaCUGGCUgUGCUu -5'
22581 5' -50.7 NC_005091.1 + 16118 0.68 0.844095
Target:  5'- cGAGGcCAGCCGCAUGAgaugcacCCGAUcCGAc -3'
miRNA:   3'- -CUCUaGUUGGUGUACU-------GGCUGuGCUu -5'
22581 5' -50.7 NC_005091.1 + 2033 0.68 0.816993
Target:  5'- -uGGUgAGCCGCAgggGACUGGCgACGAGa -3'
miRNA:   3'- cuCUAgUUGGUGUa--CUGGCUG-UGCUU- -5'
22581 5' -50.7 NC_005091.1 + 22602 0.69 0.807226
Target:  5'- -cGAUCAggGCCucgugcagGCAUGGCCGaaagGCACGAAg -3'
miRNA:   3'- cuCUAGU--UGG--------UGUACUGGC----UGUGCUU- -5'
22581 5' -50.7 NC_005091.1 + 34837 0.69 0.766291
Target:  5'- -cGcgCGGCCgggACAUGGCCGACaACGAc -3'
miRNA:   3'- cuCuaGUUGG---UGUACUGGCUG-UGCUu -5'
22581 5' -50.7 NC_005091.1 + 23990 0.7 0.755654
Target:  5'- ---uUCAACCAacagAUGACCGAgACGAAc -3'
miRNA:   3'- cucuAGUUGGUg---UACUGGCUgUGCUU- -5'
22581 5' -50.7 NC_005091.1 + 50375 0.7 0.755654
Target:  5'- -uGAUCGGCCGCGagccgacgaUGGCUGAgACGAu -3'
miRNA:   3'- cuCUAGUUGGUGU---------ACUGGCUgUGCUu -5'
22581 5' -50.7 NC_005091.1 + 1045 0.7 0.733983
Target:  5'- gGAGAUCAGCgCGgGUu-CCGGCACGAc -3'
miRNA:   3'- -CUCUAGUUG-GUgUAcuGGCUGUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.