miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 5' -59.7 NC_005091.1 + 23183 1.1 0.000242
Target:  5'- gAAUGCAGCGCAGGCCGCCAAGCAGCCg -3'
miRNA:   3'- -UUACGUCGCGUCCGGCGGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 24808 0.9 0.008293
Target:  5'- cGUGCuGCGCAGGCCGCCGAGgaAGCCg -3'
miRNA:   3'- uUACGuCGCGUCCGGCGGUUCg-UCGG- -5'
22585 5' -59.7 NC_005091.1 + 26437 0.82 0.030246
Target:  5'- --cGC-GCGCGGGCCGCCGgggcugccaucguAGCGGCCg -3'
miRNA:   3'- uuaCGuCGCGUCCGGCGGU-------------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 21225 0.8 0.045632
Target:  5'- -uUGCAGCGCAGGCgGUugCGAGCAGUg -3'
miRNA:   3'- uuACGUCGCGUCCGgCG--GUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 50363 0.78 0.059209
Target:  5'- -uUGCuuucgaacGCGCGGGCCGCCAAGC-GUCg -3'
miRNA:   3'- uuACGu-------CGCGUCCGGCGGUUCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 32811 0.77 0.07666
Target:  5'- --aGCgauGGCGUAGGCgGCCGAGUAGCa -3'
miRNA:   3'- uuaCG---UCGCGUCCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 9649 0.76 0.096223
Target:  5'- --gGUAGCGCcguugauGGCUGCCGacacGGCAGCCu -3'
miRNA:   3'- uuaCGUCGCGu------CCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 48690 0.75 0.110759
Target:  5'- cAUGCGuGCGCAcGGCCgGCCAAuGCGGCa -3'
miRNA:   3'- uUACGU-CGCGU-CCGG-CGGUU-CGUCGg -5'
22585 5' -59.7 NC_005091.1 + 56293 0.74 0.123844
Target:  5'- --cGCuGUaaaucCGGGCCGCCAAGCGGCUc -3'
miRNA:   3'- uuaCGuCGc----GUCCGGCGGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 26333 0.74 0.134584
Target:  5'- -cUGCucGCGCccGGCCGCUAcgauGGCAGCCc -3'
miRNA:   3'- uuACGu-CGCGu-CCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 52797 0.74 0.134584
Target:  5'- --gGCGGCGauCAGGCCGCacgcGGCAGCa -3'
miRNA:   3'- uuaCGUCGC--GUCCGGCGgu--UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 22161 0.73 0.145774
Target:  5'- cAGUGCGuacagcaauccGCGCAGGUCGgCAuuuugcuGGCGGCCg -3'
miRNA:   3'- -UUACGU-----------CGCGUCCGGCgGU-------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 23371 0.73 0.146175
Target:  5'- cGGUGCAGuCGUcGGUCaGCCGGGCGGCa -3'
miRNA:   3'- -UUACGUC-GCGuCCGG-CGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 23386 0.72 0.167527
Target:  5'- --gGCAGCcgacGCAGcGCCGCCGaacagaccgAGCAGCg -3'
miRNA:   3'- uuaCGUCG----CGUC-CGGCGGU---------UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 22935 0.72 0.171193
Target:  5'- cGUGCAGCaaucgaauauGGCgGCCGAGCAGCg -3'
miRNA:   3'- uUACGUCGcgu-------CCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 25629 0.72 0.181645
Target:  5'- gAAUGCGGCggGCAGccgaUCGCCGAGCuGGCCg -3'
miRNA:   3'- -UUACGUCG--CGUCc---GGCGGUUCG-UCGG- -5'
22585 5' -59.7 NC_005091.1 + 26550 0.72 0.186581
Target:  5'- -uUGaAGCGCAaGUCGCCGAGCAGgCa -3'
miRNA:   3'- uuACgUCGCGUcCGGCGGUUCGUCgG- -5'
22585 5' -59.7 NC_005091.1 + 23463 0.71 0.191634
Target:  5'- --gGCGGCGCugcgucGGCUGCCccGGCuGCCg -3'
miRNA:   3'- uuaCGUCGCGu-----CCGGCGGu-UCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 48639 0.71 0.202101
Target:  5'- --gGC-GCGCAGGCCcgaugaggaucGCUcgGGGCGGCCg -3'
miRNA:   3'- uuaCGuCGCGUCCGG-----------CGG--UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 48746 0.71 0.202101
Target:  5'- cAUGCGuUGCGGGCaCGCCAcacgcGGCAGgCCg -3'
miRNA:   3'- uUACGUcGCGUCCG-GCGGU-----UCGUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.