miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 5' -59.7 NC_005091.1 + 9539 0.69 0.297177
Target:  5'- cGUGCc-CGCacccgugacgAGGCUGCCGugucGGCAGCCa -3'
miRNA:   3'- uUACGucGCG----------UCCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 31706 0.71 0.207518
Target:  5'- --aGCcGCGCcGGCCGCCuucGGCugcGCCg -3'
miRNA:   3'- uuaCGuCGCGuCCGGCGGu--UCGu--CGG- -5'
22585 5' -59.7 NC_005091.1 + 43023 0.71 0.213061
Target:  5'- --cGCAGUG-AGGUCGUCaAAGCAGUCa -3'
miRNA:   3'- uuaCGUCGCgUCCGGCGG-UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 26602 0.7 0.224528
Target:  5'- --gGCcGcCGCcGGCCGCCGcAGCAGCa -3'
miRNA:   3'- uuaCGuC-GCGuCCGGCGGU-UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 6614 0.69 0.268831
Target:  5'- --cGCGGCGUccGGGCUGCCGGcGUucauGCCc -3'
miRNA:   3'- uuaCGUCGCG--UCCGGCGGUU-CGu---CGG- -5'
22585 5' -59.7 NC_005091.1 + 35486 0.69 0.275707
Target:  5'- --aGCuGGaCGUAGuaGCUGUCAGGCAGCCa -3'
miRNA:   3'- uuaCG-UC-GCGUC--CGGCGGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 35154 0.69 0.275707
Target:  5'- --cGCGGCGCc-GCCGCgAGGUAcuGCCg -3'
miRNA:   3'- uuaCGUCGCGucCGGCGgUUCGU--CGG- -5'
22585 5' -59.7 NC_005091.1 + 9281 0.69 0.289879
Target:  5'- -cUGCucgcCGCuGGCCGCCGaccGGCuGGCCg -3'
miRNA:   3'- uuACGuc--GCGuCCGGCGGU---UCG-UCGG- -5'
22585 5' -59.7 NC_005091.1 + 6724 0.69 0.297177
Target:  5'- -cUGCGGuCGCc-GUCGCCAacaagaAGCAGCCc -3'
miRNA:   3'- uuACGUC-GCGucCGGCGGU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 48746 0.71 0.202101
Target:  5'- cAUGCGuUGCGGGCaCGCCAcacgcGGCAGgCCg -3'
miRNA:   3'- uUACGUcGCGUCCG-GCGGU-----UCGUC-GG- -5'
22585 5' -59.7 NC_005091.1 + 25629 0.72 0.181645
Target:  5'- gAAUGCGGCggGCAGccgaUCGCCGAGCuGGCCg -3'
miRNA:   3'- -UUACGUCG--CGUCc---GGCGGUUCG-UCGG- -5'
22585 5' -59.7 NC_005091.1 + 23386 0.72 0.167527
Target:  5'- --gGCAGCcgacGCAGcGCCGCCGaacagaccgAGCAGCg -3'
miRNA:   3'- uuaCGUCG----CGUC-CGGCGGU---------UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 21225 0.8 0.045632
Target:  5'- -uUGCAGCGCAGGCgGUugCGAGCAGUg -3'
miRNA:   3'- uuACGUCGCGUCCGgCG--GUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 50363 0.78 0.059209
Target:  5'- -uUGCuuucgaacGCGCGGGCCGCCAAGC-GUCg -3'
miRNA:   3'- uuACGu-------CGCGUCCGGCGGUUCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 32811 0.77 0.07666
Target:  5'- --aGCgauGGCGUAGGCgGCCGAGUAGCa -3'
miRNA:   3'- uuaCG---UCGCGUCCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 48690 0.75 0.110759
Target:  5'- cAUGCGuGCGCAcGGCCgGCCAAuGCGGCa -3'
miRNA:   3'- uUACGU-CGCGU-CCGG-CGGUU-CGUCGg -5'
22585 5' -59.7 NC_005091.1 + 56293 0.74 0.123844
Target:  5'- --cGCuGUaaaucCGGGCCGCCAAGCGGCUc -3'
miRNA:   3'- uuaCGuCGc----GUCCGGCGGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 52797 0.74 0.134584
Target:  5'- --gGCGGCGauCAGGCCGCacgcGGCAGCa -3'
miRNA:   3'- uuaCGUCGC--GUCCGGCGgu--UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 26333 0.74 0.134584
Target:  5'- -cUGCucGCGCccGGCCGCUAcgauGGCAGCCc -3'
miRNA:   3'- uuACGu-CGCGu-CCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 22161 0.73 0.145774
Target:  5'- cAGUGCGuacagcaauccGCGCAGGUCGgCAuuuugcuGGCGGCCg -3'
miRNA:   3'- -UUACGU-----------CGCGUCCGGCgGU-------UCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.