miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 5' -59.7 NC_005091.1 + 381 0.68 0.319921
Target:  5'- --cGCcGuCGUgaAGGCgGCCAAGCGGCg -3'
miRNA:   3'- uuaCGuC-GCG--UCCGgCGGUUCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 434 0.66 0.41415
Target:  5'- --cGaCGGCGCAGGUCGagCAgcaaucGGCGGUCg -3'
miRNA:   3'- uuaC-GUCGCGUCCGGCg-GU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 3341 0.69 0.268831
Target:  5'- uGUGCAagccgaucauGCGCGGGuuGaagucaucgaUCGAGCGGCCg -3'
miRNA:   3'- uUACGU----------CGCGUCCggC----------GGUUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 4436 0.7 0.242707
Target:  5'- cAUGCAGCuugGUAGGCagGUCGAGCGGgCa -3'
miRNA:   3'- uUACGUCG---CGUCCGg-CGGUUCGUCgG- -5'
22585 5' -59.7 NC_005091.1 + 6614 0.69 0.268831
Target:  5'- --cGCGGCGUccGGGCUGCCGGcGUucauGCCc -3'
miRNA:   3'- uuaCGUCGCG--UCCGGCGGUU-CGu---CGG- -5'
22585 5' -59.7 NC_005091.1 + 6712 0.67 0.386802
Target:  5'- --aGCGcGCGCucGGGCaugaaCGCCG-GCAGCCc -3'
miRNA:   3'- uuaCGU-CGCG--UCCG-----GCGGUuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 6724 0.69 0.297177
Target:  5'- -cUGCGGuCGCc-GUCGCCAacaagaAGCAGCCc -3'
miRNA:   3'- uuACGUC-GCGucCGGCGGU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7053 0.69 0.289879
Target:  5'- cGAUGaC-GCGCGGGUCGgCGuuguagAGCAGCCc -3'
miRNA:   3'- -UUAC-GuCGCGUCCGGCgGU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7056 0.68 0.343947
Target:  5'- --gGCAG-GagaAGGCCGCCAAGCGacuCCu -3'
miRNA:   3'- uuaCGUCgCg--UCCGGCGGUUCGUc--GG- -5'
22585 5' -59.7 NC_005091.1 + 7194 0.67 0.383246
Target:  5'- --gGCGGCGCGuuaccuucgucuuGCCGgCAgcGGCGGCCg -3'
miRNA:   3'- uuaCGUCGCGUc------------CGGCgGU--UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7246 0.67 0.394881
Target:  5'- cGUGuCGGCGCGGGUCucuuuuccuugGCCGGGgcguccuCGGCCg -3'
miRNA:   3'- uUAC-GUCGCGUCCGG-----------CGGUUC-------GUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7400 0.66 0.41415
Target:  5'- -cUGguGCGCcucGGCUugGUCGAGCuGCCc -3'
miRNA:   3'- uuACguCGCGu--CCGG--CGGUUCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 7669 0.7 0.255495
Target:  5'- --aGUAaucGUGaaaaAGGCCGCCgAAGCGGCCc -3'
miRNA:   3'- uuaCGU---CGCg---UCCGGCGG-UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 9281 0.69 0.289879
Target:  5'- -cUGCucgcCGCuGGCCGCCGaccGGCuGGCCg -3'
miRNA:   3'- uuACGuc--GCGuCCGGCGGU---UCG-UCGG- -5'
22585 5' -59.7 NC_005091.1 + 9386 0.68 0.312198
Target:  5'- --gGCGGgaaccauuCGCAcGGCCaGCCGgucGGCGGCCa -3'
miRNA:   3'- uuaCGUC--------GCGU-CCGG-CGGU---UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 9539 0.69 0.297177
Target:  5'- cGUGCc-CGCacccgugacgAGGCUGCCGugucGGCAGCCa -3'
miRNA:   3'- uUACGucGCG----------UCCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 9649 0.76 0.096223
Target:  5'- --gGUAGCGCcguugauGGCUGCCGacacGGCAGCCu -3'
miRNA:   3'- uuaCGUCGCGu------CCGGCGGU----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 9796 0.66 0.423527
Target:  5'- ----aAGCGUuaccGGGuCCGCUggGCGGCUg -3'
miRNA:   3'- uuacgUCGCG----UCC-GGCGGuuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 10567 0.69 0.297177
Target:  5'- --gGCAGCGC-GGCCGCCucuucccaugugAGGUAGaCg -3'
miRNA:   3'- uuaCGUCGCGuCCGGCGG------------UUCGUCgG- -5'
22585 5' -59.7 NC_005091.1 + 10912 0.67 0.369244
Target:  5'- --cGCAGCGCguacGGGUCGUC--GCuGCCg -3'
miRNA:   3'- uuaCGUCGCG----UCCGGCGGuuCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.