miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 3' -53.4 NC_005091.1 + 24770 1.12 0.000974
Target:  5'- gCAGCGCAACCUCGCUUCGAUUCGCGCg -3'
miRNA:   3'- -GUCGCGUUGGAGCGAAGCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 26774 0.78 0.222262
Target:  5'- gGGCGCGGCCaUCGCguaccaGAUguUCGCGCg -3'
miRNA:   3'- gUCGCGUUGG-AGCGaag---CUA--AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 5431 0.77 0.260117
Target:  5'- gCAGCGCGACCggUUGCUUaCGGacaugcagacgUUCGCGCc -3'
miRNA:   3'- -GUCGCGUUGG--AGCGAA-GCU-----------AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 29504 0.73 0.433224
Target:  5'- uGGCGCGcGCCgaucacaGCUUCGAggucgUUGCGCg -3'
miRNA:   3'- gUCGCGU-UGGag-----CGAAGCUa----AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 46452 0.72 0.473046
Target:  5'- gCAGCGCGACCaUCGUUUC--UUCG-GCg -3'
miRNA:   3'- -GUCGCGUUGG-AGCGAAGcuAAGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 51340 0.71 0.52526
Target:  5'- aCAGUGCGcggaacGCCUUGCgcggguucgUGAUUUGCGCc -3'
miRNA:   3'- -GUCGCGU------UGGAGCGaa-------GCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 5919 0.71 0.52526
Target:  5'- -uGCGCAcGCCgcgcacCGCUUCGAgcCGUGCu -3'
miRNA:   3'- guCGCGU-UGGa-----GCGAAGCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 28257 0.71 0.52526
Target:  5'- cCGGUGCAACCggcgacgCGCUggCGGcUUGCGUg -3'
miRNA:   3'- -GUCGCGUUGGa------GCGAa-GCUaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 13564 0.71 0.55762
Target:  5'- gCGGCGC-ACCgUCGCcaUUCGAguaUCGCGg -3'
miRNA:   3'- -GUCGCGuUGG-AGCG--AAGCUa--AGCGCg -5'
22586 3' -53.4 NC_005091.1 + 34782 0.71 0.55762
Target:  5'- uCAGCGCGACa--GCaUCGugggCGCGCa -3'
miRNA:   3'- -GUCGCGUUGgagCGaAGCuaa-GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 22290 0.69 0.634845
Target:  5'- -cGCGCAGCaguUUGCUUUc-UUCGCGCa -3'
miRNA:   3'- guCGCGUUGg--AGCGAAGcuAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 9202 0.69 0.645944
Target:  5'- -cGUGCAGCCggCGaccCGAaUCGCGCg -3'
miRNA:   3'- guCGCGUUGGa-GCgaaGCUaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 12370 0.69 0.65703
Target:  5'- uGGCGCAACCUCGUgaagUUCagcUCGaCGUg -3'
miRNA:   3'- gUCGCGUUGGAGCG----AAGcuaAGC-GCG- -5'
22586 3' -53.4 NC_005091.1 + 34196 0.69 0.679122
Target:  5'- -cGCGCGACUgauc--CGGUUCGCGCg -3'
miRNA:   3'- guCGCGUUGGagcgaaGCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 34418 0.69 0.679122
Target:  5'- aAGCGCGGCCggcCGCagggcuacuggaUUCaggUCGCGCa -3'
miRNA:   3'- gUCGCGUUGGa--GCG------------AAGcuaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 18146 0.68 0.71189
Target:  5'- uCGGCGCgAGCUUCGCggcccggCGAUcgaGCGUg -3'
miRNA:   3'- -GUCGCG-UUGGAGCGaa-----GCUAag-CGCG- -5'
22586 3' -53.4 NC_005091.1 + 10886 0.68 0.71189
Target:  5'- gAGUGCAaugcgcGCCUUgGCcgCGAUcguUCGCGCa -3'
miRNA:   3'- gUCGCGU------UGGAG-CGaaGCUA---AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 51060 0.68 0.721594
Target:  5'- cCAGCGC-GCC--GCUUCGAUcaacgccUCGCGg -3'
miRNA:   3'- -GUCGCGuUGGagCGAAGCUA-------AGCGCg -5'
22586 3' -53.4 NC_005091.1 + 52782 0.68 0.722668
Target:  5'- cCAGCGCAaaGCCgUCGCacuggcCGGcgUGCGCg -3'
miRNA:   3'- -GUCGCGU--UGG-AGCGaa----GCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 26045 0.68 0.722668
Target:  5'- gAGCGCGAUcagCUCGCcgCGca-CGCGCu -3'
miRNA:   3'- gUCGCGUUG---GAGCGaaGCuaaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.