miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 3' -53.4 NC_005091.1 + 5431 0.77 0.260117
Target:  5'- gCAGCGCGACCggUUGCUUaCGGacaugcagacgUUCGCGCc -3'
miRNA:   3'- -GUCGCGUUGG--AGCGAA-GCU-----------AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 33423 0.67 0.785003
Target:  5'- gCAGgGCGuCCUCGCgagCGcgcUGCGCg -3'
miRNA:   3'- -GUCgCGUuGGAGCGaa-GCuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 11386 0.67 0.785003
Target:  5'- gGGCGuCGGCCgcgucacgcugCGCUUCGGccugccccuguUUCGCGg -3'
miRNA:   3'- gUCGC-GUUGGa----------GCGAAGCU-----------AAGCGCg -5'
22586 3' -53.4 NC_005091.1 + 448 0.66 0.814146
Target:  5'- gAGCaGCAAUCg-GCggUCGAUcagCGCGCa -3'
miRNA:   3'- gUCG-CGUUGGagCGa-AGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 57842 0.66 0.814146
Target:  5'- gAGCaGCAAUCg-GCggUCGAUcagCGCGCa -3'
miRNA:   3'- gUCG-CGUUGGagCGa-AGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 4660 0.66 0.823486
Target:  5'- -cGCGCAGCUcCGCgcgUCGuUUUGgGCc -3'
miRNA:   3'- guCGCGUUGGaGCGa--AGCuAAGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 3016 0.66 0.836216
Target:  5'- -cGCGUuGCCUCucgauagcccgcagaGCgagaacgCGAUUCGCGUg -3'
miRNA:   3'- guCGCGuUGGAG---------------CGaa-----GCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 52033 0.66 0.840659
Target:  5'- gAGCGUGACUuccucaaUCGCga-GAUaCGCGCc -3'
miRNA:   3'- gUCGCGUUGG-------AGCGaagCUAaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 38541 0.66 0.841542
Target:  5'- uCAGCGCGGCUgcgguuucUGCUUCGAUcUCG-GUu -3'
miRNA:   3'- -GUCGCGUUGGa-------GCGAAGCUA-AGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 54090 0.67 0.774951
Target:  5'- -cGCGCcuUgUCGCgUUCGGU-CGCGCc -3'
miRNA:   3'- guCGCGuuGgAGCG-AAGCUAaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 42529 0.68 0.722668
Target:  5'- -cGCgGCAACCggCGUagaugguguuUUCGAUcUCGCGCu -3'
miRNA:   3'- guCG-CGUUGGa-GCG----------AAGCUA-AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 47210 0.68 0.722668
Target:  5'- aAGCuGCAcgGCCacaaUCGCUUCGA--CGUGCu -3'
miRNA:   3'- gUCG-CGU--UGG----AGCGAAGCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 29504 0.73 0.433224
Target:  5'- uGGCGCGcGCCgaucacaGCUUCGAggucgUUGCGCg -3'
miRNA:   3'- gUCGCGU-UGGag-----CGAAGCUa----AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 28257 0.71 0.52526
Target:  5'- cCGGUGCAACCggcgacgCGCUggCGGcUUGCGUg -3'
miRNA:   3'- -GUCGCGUUGGa------GCGAa-GCUaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 51340 0.71 0.52526
Target:  5'- aCAGUGCGcggaacGCCUUGCgcggguucgUGAUUUGCGCc -3'
miRNA:   3'- -GUCGCGU------UGGAGCGaa-------GCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 9202 0.69 0.645944
Target:  5'- -cGUGCAGCCggCGaccCGAaUCGCGCg -3'
miRNA:   3'- guCGCGUUGGa-GCgaaGCUaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 34196 0.69 0.679122
Target:  5'- -cGCGCGACUgauc--CGGUUCGCGCg -3'
miRNA:   3'- guCGCGUUGGagcgaaGCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 18146 0.68 0.71189
Target:  5'- uCGGCGCgAGCUUCGCggcccggCGAUcgaGCGUg -3'
miRNA:   3'- -GUCGCG-UUGGAGCGaa-----GCUAag-CGCG- -5'
22586 3' -53.4 NC_005091.1 + 51060 0.68 0.721594
Target:  5'- cCAGCGC-GCC--GCUUCGAUcaacgccUCGCGg -3'
miRNA:   3'- -GUCGCGuUGGagCGAAGCUA-------AGCGCg -5'
22586 3' -53.4 NC_005091.1 + 26045 0.68 0.722668
Target:  5'- gAGCGCGAUcagCUCGCcgCGca-CGCGCu -3'
miRNA:   3'- gUCGCGUUG---GAGCGaaGCuaaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.