miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 3' -53.4 NC_005091.1 + 448 0.66 0.814146
Target:  5'- gAGCaGCAAUCg-GCggUCGAUcagCGCGCa -3'
miRNA:   3'- gUCG-CGUUGGagCGa-AGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 3016 0.66 0.836216
Target:  5'- -cGCGUuGCCUCucgauagcccgcagaGCgagaacgCGAUUCGCGUg -3'
miRNA:   3'- guCGCGuUGGAG---------------CGaa-----GCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 3408 0.67 0.764748
Target:  5'- cCGGaaGCAACCgUGcCUUCGAcaaUCGCGCg -3'
miRNA:   3'- -GUCg-CGUUGGaGC-GAAGCUa--AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 3998 0.66 0.841542
Target:  5'- aAGCGCGaauGCCUCGCgccgaucucUCGAUuUCGgaaGCc -3'
miRNA:   3'- gUCGCGU---UGGAGCGa--------AGCUA-AGCg--CG- -5'
22586 3' -53.4 NC_005091.1 + 4660 0.66 0.823486
Target:  5'- -cGCGCAGCUcCGCgcgUCGuUUUGgGCc -3'
miRNA:   3'- guCGCGUUGGaGCGa--AGCuAAGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 5086 0.67 0.785003
Target:  5'- gCGGCGCAGga-CGCgaUCGAaugcUUCGCGCu -3'
miRNA:   3'- -GUCGCGUUggaGCGa-AGCU----AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 5431 0.77 0.260117
Target:  5'- gCAGCGCGACCggUUGCUUaCGGacaugcagacgUUCGCGCc -3'
miRNA:   3'- -GUCGCGUUGG--AGCGAA-GCU-----------AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 5919 0.71 0.52526
Target:  5'- -uGCGCAcGCCgcgcacCGCUUCGAgcCGUGCu -3'
miRNA:   3'- guCGCGU-UGGa-----GCGAAGCUaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 6525 0.66 0.832621
Target:  5'- uCAGCGCAGCgCgcaCGCUgcccUCGGga-GCGUc -3'
miRNA:   3'- -GUCGCGUUG-Ga--GCGA----AGCUaagCGCG- -5'
22586 3' -53.4 NC_005091.1 + 7893 0.66 0.804612
Target:  5'- -uGuCGUAGCCUCGCgaCGGUUCGaUGg -3'
miRNA:   3'- guC-GCGUUGGAGCGaaGCUAAGC-GCg -5'
22586 3' -53.4 NC_005091.1 + 9202 0.69 0.645944
Target:  5'- -cGUGCAGCCggCGaccCGAaUCGCGCg -3'
miRNA:   3'- guCGCGUUGGa-GCgaaGCUaAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 10440 0.67 0.774951
Target:  5'- -cGCGCcguCCUCGaugUCGgg-CGCGCg -3'
miRNA:   3'- guCGCGuu-GGAGCga-AGCuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 10886 0.68 0.71189
Target:  5'- gAGUGCAaugcgcGCCUUgGCcgCGAUcguUCGCGCa -3'
miRNA:   3'- gUCGCGU------UGGAG-CGaaGCUA---AGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 11386 0.67 0.785003
Target:  5'- gGGCGuCGGCCgcgucacgcugCGCUUCGGccugccccuguUUCGCGg -3'
miRNA:   3'- gUCGC-GUUGGa----------GCGAAGCU-----------AAGCGCg -5'
22586 3' -53.4 NC_005091.1 + 12370 0.69 0.65703
Target:  5'- uGGCGCAACCUCGUgaagUUCagcUCGaCGUg -3'
miRNA:   3'- gUCGCGUUGGAGCG----AAGcuaAGC-GCG- -5'
22586 3' -53.4 NC_005091.1 + 13564 0.71 0.55762
Target:  5'- gCGGCGC-ACCgUCGCcaUUCGAguaUCGCGg -3'
miRNA:   3'- -GUCGCGuUGG-AGCG--AAGCUa--AGCGCg -5'
22586 3' -53.4 NC_005091.1 + 17165 0.68 0.722668
Target:  5'- gGGUGCuacACUUCGCgccgaggUCGAgagcaCGCGCa -3'
miRNA:   3'- gUCGCGu--UGGAGCGa------AGCUaa---GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 18146 0.68 0.71189
Target:  5'- uCGGCGCgAGCUUCGCggcccggCGAUcgaGCGUg -3'
miRNA:   3'- -GUCGCG-UUGGAGCGaa-----GCUAag-CGCG- -5'
22586 3' -53.4 NC_005091.1 + 22290 0.69 0.634845
Target:  5'- -cGCGCAGCaguUUGCUUUc-UUCGCGCa -3'
miRNA:   3'- guCGCGUUGg--AGCGAAGcuAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 23858 0.66 0.832621
Target:  5'- aCGGagaGCGGCC-CGCa--GAUUCaGCGCa -3'
miRNA:   3'- -GUCg--CGUUGGaGCGaagCUAAG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.