miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 5' -57.7 NC_005091.1 + 24733 1.06 0.000859
Target:  5'- aAAGCACUGGCCGACAACAAGGCGGCGu -3'
miRNA:   3'- -UUCGUGACCGGCUGUUGUUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 44881 0.77 0.11745
Target:  5'- cGGUAC-GGgCGGCGGCAAGGCGGCc -3'
miRNA:   3'- uUCGUGaCCgGCUGUUGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 44794 0.75 0.150743
Target:  5'- gAAGCACUcGGCCGACGAgguCAAGGCGauccugauccGCGu -3'
miRNA:   3'- -UUCGUGA-CCGGCUGUU---GUUCCGC----------CGC- -5'
22586 5' -57.7 NC_005091.1 + 6779 0.74 0.17276
Target:  5'- cAAGCGgugUUGGCCGGCcuuaagGACGAGGCGGUc -3'
miRNA:   3'- -UUCGU---GACCGGCUG------UUGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 6994 0.73 0.21396
Target:  5'- cGAGCuGCUGGCgGAaGGCAAGGUGaGCGg -3'
miRNA:   3'- -UUCG-UGACCGgCUgUUGUUCCGC-CGC- -5'
22586 5' -57.7 NC_005091.1 + 42421 0.73 0.224912
Target:  5'- gAAGCGCUcgccgagGGCuaCGACGACAAcGGCGGCc -3'
miRNA:   3'- -UUCGUGA-------CCG--GCUGUUGUU-CCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 46017 0.72 0.231468
Target:  5'- -cGCACcGcGCCGgaacGCAGCGAGaGCGGCGg -3'
miRNA:   3'- uuCGUGaC-CGGC----UGUUGUUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 7216 0.72 0.231468
Target:  5'- gGGGCGucCUcGGCCGGCAGau-GGCGGCGc -3'
miRNA:   3'- -UUCGU--GA-CCGGCUGUUguuCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 24037 0.72 0.231468
Target:  5'- cAGcCACUGGcCCGGCAuCugcGGCGGCGa -3'
miRNA:   3'- uUC-GUGACC-GGCUGUuGuu-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 44837 0.72 0.237567
Target:  5'- --cCACggcGGCCGGCAA--GGGCGGCGg -3'
miRNA:   3'- uucGUGa--CCGGCUGUUguUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 55905 0.71 0.277018
Target:  5'- uGGCGCagcaGGCCGACcaacuGCGugcgcAGGCGGCGc -3'
miRNA:   3'- uUCGUGa---CCGGCUGu----UGU-----UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 32742 0.71 0.291285
Target:  5'- cGGCGaccacaaGGUCGACGGCAaucccuacgAGGCGGCGa -3'
miRNA:   3'- uUCGUga-----CCGGCUGUUGU---------UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 57152 0.71 0.30612
Target:  5'- -cGCccgACUGGCUGAgAugGaaugGGGCGGCGa -3'
miRNA:   3'- uuCG---UGACCGGCUgUugU----UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 52185 0.71 0.308394
Target:  5'- gGGGCGuCccgaugacuuccaaaUGGCCGACAcggacccgguaguGCGGGGCGGCu -3'
miRNA:   3'- -UUCGU-G---------------ACCGGCUGU-------------UGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 12373 0.7 0.321527
Target:  5'- cGAGCGC-GGCC-AguGCGAcGGCGGCGa -3'
miRNA:   3'- -UUCGUGaCCGGcUguUGUU-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 57831 0.7 0.321527
Target:  5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3'
miRNA:   3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5'
22586 5' -57.7 NC_005091.1 + 437 0.7 0.321527
Target:  5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3'
miRNA:   3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5'
22586 5' -57.7 NC_005091.1 + 34829 0.7 0.329445
Target:  5'- cGGgACaUGGCCGACAACGAcGGCuucacgaacGGCGc -3'
miRNA:   3'- uUCgUG-ACCGGCUGUUGUU-CCG---------CCGC- -5'
22586 5' -57.7 NC_005091.1 + 32178 0.69 0.365978
Target:  5'- cGGCGCggacccGGCCGGCGGCAAGGgcaacgaagcugaaGGCa -3'
miRNA:   3'- uUCGUGa-----CCGGCUGUUGUUCCg-------------CCGc -5'
22586 5' -57.7 NC_005091.1 + 53645 0.69 0.371171
Target:  5'- -uGCGCUGGCaaugguGCGACGAGGUagaaGGCGc -3'
miRNA:   3'- uuCGUGACCGgc----UGUUGUUCCG----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.