miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 5' -57.7 NC_005091.1 + 437 0.7 0.321527
Target:  5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3'
miRNA:   3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5'
22586 5' -57.7 NC_005091.1 + 810 0.66 0.580052
Target:  5'- -uGCGCUGcGCUGccGCGugGGuguacGGCGGCGa -3'
miRNA:   3'- uuCGUGAC-CGGC--UGUugUU-----CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 4225 0.66 0.537027
Target:  5'- cGGCugUGGCaGAgGAUgAAGuGCGGCGu -3'
miRNA:   3'- uUCGugACCGgCUgUUG-UUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 4822 0.67 0.474785
Target:  5'- -cGCGCUcGGCgCGGCGGCAAcGGUcaagcgGGCGa -3'
miRNA:   3'- uuCGUGA-CCG-GCUGUUGUU-CCG------CCGC- -5'
22586 5' -57.7 NC_005091.1 + 6187 0.68 0.407054
Target:  5'- uAGCGCgggGGCUugcgGGCGACGAGccgaaGCGGCGc -3'
miRNA:   3'- uUCGUGa--CCGG----CUGUUGUUC-----CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 6779 0.74 0.17276
Target:  5'- cAAGCGgugUUGGCCGGCcuuaagGACGAGGCGGUc -3'
miRNA:   3'- -UUCGU---GACCGGCUG------UUGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 6994 0.73 0.21396
Target:  5'- cGAGCuGCUGGCgGAaGGCAAGGUGaGCGg -3'
miRNA:   3'- -UUCG-UGACCGgCUgUUGUUCCGC-CGC- -5'
22586 5' -57.7 NC_005091.1 + 7216 0.72 0.231468
Target:  5'- gGGGCGucCUcGGCCGGCAGau-GGCGGCGc -3'
miRNA:   3'- -UUCGU--GA-CCGGCUGUUguuCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 10341 0.67 0.484921
Target:  5'- aGAGUACUGcGCgugucgcgcgccCGACAuCGAGGaCGGCGc -3'
miRNA:   3'- -UUCGUGAC-CG------------GCUGUuGUUCC-GCCGC- -5'
22586 5' -57.7 NC_005091.1 + 12373 0.7 0.321527
Target:  5'- cGAGCGC-GGCC-AguGCGAcGGCGGCGa -3'
miRNA:   3'- -UUCGUGaCCGGcUguUGUU-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 14337 0.68 0.407054
Target:  5'- cGGUcaACgGGUCGGCGuacgacacGCAAGGCGGCu -3'
miRNA:   3'- uUCG--UGaCCGGCUGU--------UGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 16820 0.66 0.56813
Target:  5'- gGAGCGugGGCCaaucacgggGACGACGuagcggccuuccuAGGCGGCGc -3'
miRNA:   3'- -UUCGUgaCCGG---------CUGUUGU-------------UCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 17336 0.67 0.464756
Target:  5'- uAGCGCUGGCCGuuCAGCuucAGauugccCGGCGg -3'
miRNA:   3'- uUCGUGACCGGCu-GUUGu--UCc-----GCCGC- -5'
22586 5' -57.7 NC_005091.1 + 19418 0.68 0.425793
Target:  5'- cGGCACaucuucaaaGCCGGCAuguGCGAGcGCGGCGc -3'
miRNA:   3'- uUCGUGac-------CGGCUGU---UGUUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 22178 0.67 0.505495
Target:  5'- -cGCGCaGGUCGGCAuuuuGCu-GGCGGCc -3'
miRNA:   3'- uuCGUGaCCGGCUGU----UGuuCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 23290 0.68 0.417297
Target:  5'- cGGCACgguagucggccugaaGGCUGAUGAacAGGCGGCGa -3'
miRNA:   3'- uUCGUGa--------------CCGGCUGUUguUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 24037 0.72 0.231468
Target:  5'- cAGcCACUGGcCCGGCAuCugcGGCGGCGa -3'
miRNA:   3'- uUC-GUGACC-GGCUGUuGuu-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 24733 1.06 0.000859
Target:  5'- aAAGCACUGGCCGACAACAAGGCGGCGu -3'
miRNA:   3'- -UUCGUGACCGGCUGUUGUUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 25040 0.68 0.454838
Target:  5'- cGAG-ACUGGUCGGCAcUgcGGCGGCc -3'
miRNA:   3'- -UUCgUGACCGGCUGUuGuuCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 25815 0.68 0.410761
Target:  5'- -uGCcUUGGCCGACAcggcgaacuugccguACGAcGCGGCGa -3'
miRNA:   3'- uuCGuGACCGGCUGU---------------UGUUcCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.