Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22586 | 5' | -57.7 | NC_005091.1 | + | 6994 | 0.73 | 0.21396 |
Target: 5'- cGAGCuGCUGGCgGAaGGCAAGGUGaGCGg -3' miRNA: 3'- -UUCG-UGACCGgCUgUUGUUCCGC-CGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 4822 | 0.67 | 0.474785 |
Target: 5'- -cGCGCUcGGCgCGGCGGCAAcGGUcaagcgGGCGa -3' miRNA: 3'- uuCGUGA-CCG-GCUGUUGUU-CCG------CCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 10341 | 0.67 | 0.484921 |
Target: 5'- aGAGUACUGcGCgugucgcgcgccCGACAuCGAGGaCGGCGc -3' miRNA: 3'- -UUCGUGAC-CG------------GCUGUuGUUCC-GCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 22178 | 0.67 | 0.505495 |
Target: 5'- -cGCGCaGGUCGGCAuuuuGCu-GGCGGCc -3' miRNA: 3'- uuCGUGaCCGGCUGU----UGuuCCGCCGc -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 31781 | 0.67 | 0.515922 |
Target: 5'- cGGCACgagcaGGCCGcCGACGAGcGCGaCGa -3' miRNA: 3'- uUCGUGa----CCGGCuGUUGUUC-CGCcGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 48818 | 0.67 | 0.515922 |
Target: 5'- -cGCGCUgcgccguacGGCCGAUGACAu-GCGGCc -3' miRNA: 3'- uuCGUGA---------CCGGCUGUUGUucCGCCGc -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 52087 | 0.66 | 0.537027 |
Target: 5'- -cGCAUUGGCgCGGCcguauGCcgugaaAAGGCGGCc -3' miRNA: 3'- uuCGUGACCG-GCUGu----UG------UUCCGCCGc -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 55371 | 0.66 | 0.573543 |
Target: 5'- -uGCcgACUGGauGGCAACGAGGCgaccaaggaagucauGGCGg -3' miRNA: 3'- uuCG--UGACCggCUGUUGUUCCG---------------CCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 810 | 0.66 | 0.580052 |
Target: 5'- -uGCGCUGcGCUGccGCGugGGuguacGGCGGCGa -3' miRNA: 3'- uuCGUGAC-CGGC--UGUugUU-----CCGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 17336 | 0.67 | 0.464756 |
Target: 5'- uAGCGCUGGCCGuuCAGCuucAGauugccCGGCGg -3' miRNA: 3'- uUCGUGACCGGCu-GUUGu--UCc-----GCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 31335 | 0.68 | 0.445036 |
Target: 5'- -uGCACguucGGCgCGACgAACGGGGCGaGCu -3' miRNA: 3'- uuCGUGa---CCG-GCUG-UUGUUCCGC-CGc -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 46017 | 0.72 | 0.231468 |
Target: 5'- -cGCACcGcGCCGgaacGCAGCGAGaGCGGCGg -3' miRNA: 3'- uuCGUGaC-CGGC----UGUUGUUC-CGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 55905 | 0.71 | 0.277018 |
Target: 5'- uGGCGCagcaGGCCGACcaacuGCGugcgcAGGCGGCGc -3' miRNA: 3'- uUCGUGa---CCGGCUGu----UGU-----UCCGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 57152 | 0.71 | 0.30612 |
Target: 5'- -cGCccgACUGGCUGAgAugGaaugGGGCGGCGa -3' miRNA: 3'- uuCG---UGACCGGCUgUugU----UCCGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 52185 | 0.71 | 0.308394 |
Target: 5'- gGGGCGuCccgaugacuuccaaaUGGCCGACAcggacccgguaguGCGGGGCGGCu -3' miRNA: 3'- -UUCGU-G---------------ACCGGCUGU-------------UGUUCCGCCGc -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 437 | 0.7 | 0.321527 |
Target: 5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3' miRNA: 3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 57831 | 0.7 | 0.321527 |
Target: 5'- cGGCGCaGGUCGAgCAGCAAucGGCGGuCGa -3' miRNA: 3'- uUCGUGaCCGGCU-GUUGUU--CCGCC-GC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 12373 | 0.7 | 0.321527 |
Target: 5'- cGAGCGC-GGCC-AguGCGAcGGCGGCGa -3' miRNA: 3'- -UUCGUGaCCGGcUguUGUU-CCGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 25815 | 0.68 | 0.410761 |
Target: 5'- -uGCcUUGGCCGACAcggcgaacuugccguACGAcGCGGCGa -3' miRNA: 3'- uuCGuGACCGGCUGU---------------UGUUcCGCCGC- -5' |
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22586 | 5' | -57.7 | NC_005091.1 | + | 24733 | 1.06 | 0.000859 |
Target: 5'- aAAGCACUGGCCGACAACAAGGCGGCGu -3' miRNA: 3'- -UUCGUGACCGGCUGUUGUUCCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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