miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 5' -56.2 NC_005091.1 + 26185 1.09 0.000933
Target:  5'- uUUCGCUGCUCGACCGCAUCACGACGGg -3'
miRNA:   3'- -AAGCGACGAGCUGGCGUAGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 57859 0.8 0.0979
Target:  5'- -cCGCcGCUUGGCCGCcuUCACGACGGc -3'
miRNA:   3'- aaGCGaCGAGCUGGCGu-AGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 465 0.8 0.0979
Target:  5'- -cCGCcGCUUGGCCGCcuUCACGACGGc -3'
miRNA:   3'- aaGCGaCGAGCUGGCGu-AGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 14117 0.75 0.233187
Target:  5'- cUCGCgGCUgCGACCGaccaGUaCACGGCGGa -3'
miRNA:   3'- aAGCGaCGA-GCUGGCg---UA-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 514 0.74 0.251851
Target:  5'- aUUGCUGCUCGACCuGCgccGUCGCGuGCGu -3'
miRNA:   3'- aAGCGACGAGCUGG-CG---UAGUGC-UGCc -5'
22590 5' -56.2 NC_005091.1 + 57908 0.74 0.251851
Target:  5'- aUUGCUGCUCGACCuGCgccGUCGCGuGCGu -3'
miRNA:   3'- aAGCGACGAGCUGG-CG---UAGUGC-UGCc -5'
22590 5' -56.2 NC_005091.1 + 38007 0.74 0.257686
Target:  5'- gUUCGCUGCUCGcuucuucuugaacGCUGC-UCGCaGACGGc -3'
miRNA:   3'- -AAGCGACGAGC-------------UGGCGuAGUG-CUGCC- -5'
22590 5' -56.2 NC_005091.1 + 11371 0.73 0.299428
Target:  5'- -cCGCUGUuugaguccgggcgUCGGCCGCGUCACGcuGCGc -3'
miRNA:   3'- aaGCGACG-------------AGCUGGCGUAGUGC--UGCc -5'
22590 5' -56.2 NC_005091.1 + 1015 0.73 0.307625
Target:  5'- -gCGCUGCUCGG-CGuCAaUACGACGGa -3'
miRNA:   3'- aaGCGACGAGCUgGC-GUaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 24840 0.73 0.307625
Target:  5'- gUCGCagaacaGCUCGGCaggGCAUCACgGACGGc -3'
miRNA:   3'- aAGCGa-----CGAGCUGg--CGUAGUG-CUGCC- -5'
22590 5' -56.2 NC_005091.1 + 14308 0.73 0.315226
Target:  5'- --gGCgGCUCGACCGUgcccGUCACGAUGc -3'
miRNA:   3'- aagCGaCGAGCUGGCG----UAGUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 50709 0.71 0.369772
Target:  5'- gUCGCcaUGCUUGuaccgcuccggauaGCCGCGcgCACGACGGc -3'
miRNA:   3'- aAGCG--ACGAGC--------------UGGCGUa-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 22108 0.71 0.389928
Target:  5'- --aGCUGCauaUCGGCCGCAUgG-GACGGc -3'
miRNA:   3'- aagCGACG---AGCUGGCGUAgUgCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 22845 0.7 0.426648
Target:  5'- -cCGCUGCUCGGCCGcCAUauuCGAUu- -3'
miRNA:   3'- aaGCGACGAGCUGGC-GUAgu-GCUGcc -5'
22590 5' -56.2 NC_005091.1 + 42042 0.7 0.436145
Target:  5'- -gUGCUGCUCGACC---UCGCGAaucCGGa -3'
miRNA:   3'- aaGCGACGAGCUGGcguAGUGCU---GCC- -5'
22590 5' -56.2 NC_005091.1 + 31148 0.7 0.445761
Target:  5'- -gCGCUGUUCGAgCUGCGaaucCGCGACGa -3'
miRNA:   3'- aaGCGACGAGCU-GGCGUa---GUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 9004 0.7 0.455495
Target:  5'- uUUCaGgUGCUCGGCCGCAgcuuCGuACGGg -3'
miRNA:   3'- -AAG-CgACGAGCUGGCGUagu-GC-UGCC- -5'
22590 5' -56.2 NC_005091.1 + 55023 0.7 0.455495
Target:  5'- -gCGCggcGCUUGGCgagCGCGUUGCGGCGGc -3'
miRNA:   3'- aaGCGa--CGAGCUG---GCGUAGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 13521 0.69 0.475301
Target:  5'- gUCGCUGCUCGacGCCGgGUCGCu---- -3'
miRNA:   3'- aAGCGACGAGC--UGGCgUAGUGcugcc -5'
22590 5' -56.2 NC_005091.1 + 811 0.69 0.475301
Target:  5'- -gCGCUGCgCuGCCGCGUgggugUACGGCGGc -3'
miRNA:   3'- aaGCGACGaGcUGGCGUA-----GUGCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.