miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 5' -56.2 NC_005091.1 + 44574 0.66 0.655755
Target:  5'- -gCGCcuuCUCGGCCGCGUCguACGugGc -3'
miRNA:   3'- aaGCGac-GAGCUGGCGUAG--UGCugCc -5'
22590 5' -56.2 NC_005091.1 + 19448 0.68 0.537075
Target:  5'- aUCGCUGCaccagcaaUCG-CCGaa-CACGACGGc -3'
miRNA:   3'- aAGCGACG--------AGCuGGCguaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 31610 0.68 0.547657
Target:  5'- --gGCUGCUUGGCguucuucgaaCGUAUCGgCGGCGGc -3'
miRNA:   3'- aagCGACGAGCUG----------GCGUAGU-GCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 9786 0.68 0.547657
Target:  5'- cUCGCUGgaccCUCGGCCGCugcgCGCGAa-- -3'
miRNA:   3'- aAGCGAC----GAGCUGGCGua--GUGCUgcc -5'
22590 5' -56.2 NC_005091.1 + 31215 0.68 0.558304
Target:  5'- aUCgGCUGCUCG-CCGg--CACGACGc -3'
miRNA:   3'- aAG-CGACGAGCuGGCguaGUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 6457 0.67 0.61225
Target:  5'- -gCGCUGCgcugaaGGaaGCAggCGCGACGGa -3'
miRNA:   3'- aaGCGACGag----CUggCGUa-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 26336 0.67 0.623124
Target:  5'- cUCGC-GCcCGGCCGC--UACGAUGGc -3'
miRNA:   3'- aAGCGaCGaGCUGGCGuaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 11067 0.67 0.634006
Target:  5'- uUUCGUuaUGUUCGACCauuuGUuUCAgGACGGg -3'
miRNA:   3'- -AAGCG--ACGAGCUGG----CGuAGUgCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 3932 0.67 0.643799
Target:  5'- aUUCGCgcuUGCUcucgaagCGGCCGC--CACGAUGGu -3'
miRNA:   3'- -AAGCG---ACGA-------GCUGGCGuaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 33507 0.68 0.537075
Target:  5'- --gGCcgGCaUCGAuCCGCAUCACGGCu- -3'
miRNA:   3'- aagCGa-CG-AGCU-GGCGUAGUGCUGcc -5'
22590 5' -56.2 NC_005091.1 + 21506 0.69 0.516132
Target:  5'- aUCGCcgcaagcgUGCUCuGCCGCGUCGCcuCGGc -3'
miRNA:   3'- aAGCG--------ACGAGcUGGCGUAGUGcuGCC- -5'
22590 5' -56.2 NC_005091.1 + 16797 0.69 0.485363
Target:  5'- aUCGCc-CUCGGCCG-GUgACGACGGa -3'
miRNA:   3'- aAGCGacGAGCUGGCgUAgUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 11371 0.73 0.299428
Target:  5'- -cCGCUGUuugaguccgggcgUCGGCCGCGUCACGcuGCGc -3'
miRNA:   3'- aaGCGACG-------------AGCUGGCGUAGUGC--UGCc -5'
22590 5' -56.2 NC_005091.1 + 1015 0.73 0.307625
Target:  5'- -gCGCUGCUCGG-CGuCAaUACGACGGa -3'
miRNA:   3'- aaGCGACGAGCUgGC-GUaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 50709 0.71 0.369772
Target:  5'- gUCGCcaUGCUUGuaccgcuccggauaGCCGCGcgCACGACGGc -3'
miRNA:   3'- aAGCG--ACGAGC--------------UGGCGUa-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 22108 0.71 0.389928
Target:  5'- --aGCUGCauaUCGGCCGCAUgG-GACGGc -3'
miRNA:   3'- aagCGACG---AGCUGGCGUAgUgCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 22845 0.7 0.426648
Target:  5'- -cCGCUGCUCGGCCGcCAUauuCGAUu- -3'
miRNA:   3'- aaGCGACGAGCUGGC-GUAgu-GCUGcc -5'
22590 5' -56.2 NC_005091.1 + 31148 0.7 0.445761
Target:  5'- -gCGCUGUUCGAgCUGCGaaucCGCGACGa -3'
miRNA:   3'- aaGCGACGAGCU-GGCGUa---GUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 811 0.69 0.475301
Target:  5'- -gCGCUGCgCuGCCGCGUgggugUACGGCGGc -3'
miRNA:   3'- aaGCGACGaGcUGGCGUA-----GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 13521 0.69 0.475301
Target:  5'- gUCGCUGCUCGacGCCGgGUCGCu---- -3'
miRNA:   3'- aAGCGACGAGC--UGGCgUAGUGcugcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.