miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 5' -56.2 NC_005091.1 + 465 0.8 0.0979
Target:  5'- -cCGCcGCUUGGCCGCcuUCACGACGGc -3'
miRNA:   3'- aaGCGaCGAGCUGGCGu-AGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 514 0.74 0.251851
Target:  5'- aUUGCUGCUCGACCuGCgccGUCGCGuGCGu -3'
miRNA:   3'- aAGCGACGAGCUGG-CG---UAGUGC-UGCc -5'
22590 5' -56.2 NC_005091.1 + 811 0.69 0.475301
Target:  5'- -gCGCUGCgCuGCCGCGUgggugUACGGCGGc -3'
miRNA:   3'- aaGCGACGaGcUGGCGUA-----GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 1015 0.73 0.307625
Target:  5'- -gCGCUGCUCGG-CGuCAaUACGACGGa -3'
miRNA:   3'- aaGCGACGAGCUgGC-GUaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 1376 0.68 0.579764
Target:  5'- aUCGaCUGCUUG-CCGCAcgUCGCGAagaacaccugcCGGu -3'
miRNA:   3'- aAGC-GACGAGCuGGCGU--AGUGCU-----------GCC- -5'
22590 5' -56.2 NC_005091.1 + 3932 0.67 0.643799
Target:  5'- aUUCGCgcuUGCUcucgaagCGGCCGC--CACGAUGGu -3'
miRNA:   3'- -AAGCG---ACGA-------GCUGGCGuaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 5870 0.67 0.634006
Target:  5'- aUCGCggauagGCUUGGCUGgAUCGCuGuCGGg -3'
miRNA:   3'- aAGCGa-----CGAGCUGGCgUAGUG-CuGCC- -5'
22590 5' -56.2 NC_005091.1 + 6457 0.67 0.61225
Target:  5'- -gCGCUGCgcugaaGGaaGCAggCGCGACGGa -3'
miRNA:   3'- aaGCGACGag----CUggCGUa-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 7274 0.68 0.533914
Target:  5'- cUCGCUGCUCG-CCGCcauccgucuugcucGUguCGGCGcGg -3'
miRNA:   3'- aAGCGACGAGCuGGCG--------------UAguGCUGC-C- -5'
22590 5' -56.2 NC_005091.1 + 9004 0.7 0.455495
Target:  5'- uUUCaGgUGCUCGGCCGCAgcuuCGuACGGg -3'
miRNA:   3'- -AAG-CgACGAGCUGGCGUagu-GC-UGCC- -5'
22590 5' -56.2 NC_005091.1 + 9786 0.68 0.547657
Target:  5'- cUCGCUGgaccCUCGGCCGCugcgCGCGAa-- -3'
miRNA:   3'- aAGCGAC----GAGCUGGCGua--GUGCUgcc -5'
22590 5' -56.2 NC_005091.1 + 11067 0.67 0.634006
Target:  5'- uUUCGUuaUGUUCGACCauuuGUuUCAgGACGGg -3'
miRNA:   3'- -AAGCG--ACGAGCUGG----CGuAGUgCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 11371 0.73 0.299428
Target:  5'- -cCGCUGUuugaguccgggcgUCGGCCGCGUCACGcuGCGc -3'
miRNA:   3'- aaGCGACG-------------AGCUGGCGUAGUGC--UGCc -5'
22590 5' -56.2 NC_005091.1 + 13521 0.69 0.475301
Target:  5'- gUCGCUGCUCGacGCCGgGUCGCu---- -3'
miRNA:   3'- aAGCGACGAGC--UGGCgUAGUGcugcc -5'
22590 5' -56.2 NC_005091.1 + 14117 0.75 0.233187
Target:  5'- cUCGCgGCUgCGACCGaccaGUaCACGGCGGa -3'
miRNA:   3'- aAGCGaCGA-GCUGGCg---UA-GUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 14209 0.66 0.688193
Target:  5'- -cCGCgaaGC-CGAUaCGCAUCGUGACGGg -3'
miRNA:   3'- aaGCGa--CGaGCUG-GCGUAGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 14308 0.73 0.315226
Target:  5'- --gGCgGCUCGACCGUgcccGUCACGAUGc -3'
miRNA:   3'- aagCGaCGAGCUGGCG----UAGUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 16345 0.66 0.677419
Target:  5'- -aCG-UGCUCGGCgCGUucGUCGCGAgCGGc -3'
miRNA:   3'- aaGCgACGAGCUG-GCG--UAGUGCU-GCC- -5'
22590 5' -56.2 NC_005091.1 + 16797 0.69 0.485363
Target:  5'- aUCGCc-CUCGGCCG-GUgACGACGGa -3'
miRNA:   3'- aAGCGacGAGCUGGCgUAgUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 19448 0.68 0.537075
Target:  5'- aUCGCUGCaccagcaaUCG-CCGaa-CACGACGGc -3'
miRNA:   3'- aAGCGACG--------AGCuGGCguaGUGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.