miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2264 3' -60 NC_001405.1 + 11197 0.66 0.365592
Target:  5'- -gCCGCCGcgucaGCCGCgGAUGuUGCCCc -3'
miRNA:   3'- ugGGCGGUug---CGGUGgUUGC-ACGGGu -5'
2264 3' -60 NC_001405.1 + 18909 0.66 0.348518
Target:  5'- gUuuGCCcGCGCCACCGagACGUacuucaGCCUg -3'
miRNA:   3'- uGggCGGuUGCGGUGGU--UGCA------CGGGu -5'
2264 3' -60 NC_001405.1 + 26008 0.66 0.34768
Target:  5'- cGCCCGCCAaauGCGgagcuuaCCGCCuGCGUcauuaCCCAg -3'
miRNA:   3'- -UGGGCGGU---UGC-------GGUGGuUGCAc----GGGU- -5'
2264 3' -60 NC_001405.1 + 9468 0.66 0.340198
Target:  5'- gUgCGCCGuCGUCGCCGcCGUGUCCc -3'
miRNA:   3'- uGgGCGGUuGCGGUGGUuGCACGGGu -5'
2264 3' -60 NC_001405.1 + 16400 0.67 0.316105
Target:  5'- gACUCgGUUAGCgGCCugC-GCGUGCCCGu -3'
miRNA:   3'- -UGGG-CGGUUG-CGGugGuUGCACGGGU- -5'
2264 3' -60 NC_001405.1 + 8624 0.67 0.306836
Target:  5'- gGCCCGCCcGCGUCACCgcuuuuagaugcaucAuccaaggacacccccGCG-GCCCAc -3'
miRNA:   3'- -UGGGCGGuUGCGGUGG---------------U---------------UGCaCGGGU- -5'
2264 3' -60 NC_001405.1 + 17383 0.67 0.300772
Target:  5'- gGCaCCGCCAGCG-CACU-AC-UGCCCGa -3'
miRNA:   3'- -UG-GGCGGUUGCgGUGGuUGcACGGGU- -5'
2264 3' -60 NC_001405.1 + 14259 0.67 0.300772
Target:  5'- aACCCagcGCCGcCGCCACUGGCGccgcGCUCAc -3'
miRNA:   3'- -UGGG---CGGUuGCGGUGGUUGCa---CGGGU- -5'
2264 3' -60 NC_001405.1 + 26400 0.67 0.286019
Target:  5'- cCUCGCCGGCGCC-CCAGaaauuggcaacCGUuCCCAg -3'
miRNA:   3'- uGGGCGGUUGCGGuGGUU-----------GCAcGGGU- -5'
2264 3' -60 NC_001405.1 + 28435 0.67 0.285296
Target:  5'- cACCUGCCGggaacguacgaguGCGUCACCGGuugcUGcGCCCAc -3'
miRNA:   3'- -UGGGCGGU-------------UGCGGUGGUU----GCaCGGGU- -5'
2264 3' -60 NC_001405.1 + 14245 0.67 0.278859
Target:  5'- gACCCGCCGuuugugccuccGCGgUACCuGCG-GCCUAc -3'
miRNA:   3'- -UGGGCGGU-----------UGCgGUGGuUGCaCGGGU- -5'
2264 3' -60 NC_001405.1 + 27699 0.67 0.278859
Target:  5'- -gCgGCCAGCGCCGCCGAUcugaaaUGuCCCGu -3'
miRNA:   3'- ugGgCGGUUGCGGUGGUUGc-----AC-GGGU- -5'
2264 3' -60 NC_001405.1 + 8567 0.68 0.260912
Target:  5'- cGCCCGCCGcgcgguaccguagucGCGCCGCgGggauGCG-GCCUc -3'
miRNA:   3'- -UGGGCGGU---------------UGCGGUGgU----UGCaCGGGu -5'
2264 3' -60 NC_001405.1 + 23999 0.68 0.257571
Target:  5'- cCCCGUCGccguCGCCGCCGccuccccGCGcGCCCc -3'
miRNA:   3'- uGGGCGGUu---GCGGUGGU-------UGCaCGGGu -5'
2264 3' -60 NC_001405.1 + 17787 0.68 0.251644
Target:  5'- cGCCCGUCAGgcCGUgGCCGGCcaUGCCCc -3'
miRNA:   3'- -UGGGCGGUU--GCGgUGGUUGc-ACGGGu -5'
2264 3' -60 NC_001405.1 + 23581 0.68 0.245192
Target:  5'- aACCCGCUGA-GCCuGCCGAuCGUGUCUg -3'
miRNA:   3'- -UGGGCGGUUgCGG-UGGUU-GCACGGGu -5'
2264 3' -60 NC_001405.1 + 16176 0.68 0.243918
Target:  5'- -gUCGCCAcCGCCGCCGACccggcacugccGCCCAa -3'
miRNA:   3'- ugGGCGGUuGCGGUGGUUGca---------CGGGU- -5'
2264 3' -60 NC_001405.1 + 12732 0.69 0.226655
Target:  5'- uCCUGaguacaCAGC-CCGCCAACGUGCCgCGg -3'
miRNA:   3'- uGGGCg-----GUUGcGGUGGUUGCACGG-GU- -5'
2264 3' -60 NC_001405.1 + 16083 0.69 0.214968
Target:  5'- cACCgCGUCAaugGCGUCAUCGACGguggugcGCCCAg -3'
miRNA:   3'- -UGG-GCGGU---UGCGGUGGUUGCa------CGGGU- -5'
2264 3' -60 NC_001405.1 + 26449 0.69 0.203801
Target:  5'- cUCCGCUccucaGGCGCCGCCGGCacUGCCUg -3'
miRNA:   3'- uGGGCGG-----UUGCGGUGGUUGc-ACGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.