miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22646 3' -68 NC_005091.1 + 10220 0.66 0.2241
Target:  5'- -gGCGCUCggcgCGUGCCGGCGuaACGuCCGUc -3'
miRNA:   3'- ugCGCGGG----GCGCGGCCGC--UGCcGGCG- -5'
22646 3' -68 NC_005091.1 + 56794 0.66 0.2241
Target:  5'- cGCGgGCaaCGCGauGGCG-UGGCUGCa -3'
miRNA:   3'- -UGCgCGggGCGCggCCGCuGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 28229 0.66 0.220903
Target:  5'- cAUGCGCCCgGCGugacgaugaugguuuCCGGUGcaacCGGCgaCGCg -3'
miRNA:   3'- -UGCGCGGGgCGC---------------GGCCGCu---GCCG--GCG- -5'
22646 3' -68 NC_005091.1 + 10228 0.66 0.218793
Target:  5'- gACGaCGaCaaGCGCCGaGCGGgGGCCGa -3'
miRNA:   3'- -UGC-GCgGggCGCGGC-CGCUgCCGGCg -5'
22646 3' -68 NC_005091.1 + 18881 0.66 0.218793
Target:  5'- -aGaCGCCCCGgaaCGCCGGC-ACGauuCCGCc -3'
miRNA:   3'- ugC-GCGGGGC---GCGGCCGcUGCc--GGCG- -5'
22646 3' -68 NC_005091.1 + 23500 0.66 0.218793
Target:  5'- -gGCGa--CGCGCgCGGCGAUGG-CGCu -3'
miRNA:   3'- ugCGCgggGCGCG-GCCGCUGCCgGCG- -5'
22646 3' -68 NC_005091.1 + 22597 0.66 0.218793
Target:  5'- -aGgGCCUCGUGCaGGC-AUGGCCGa -3'
miRNA:   3'- ugCgCGGGGCGCGgCCGcUGCCGGCg -5'
22646 3' -68 NC_005091.1 + 9371 0.66 0.218793
Target:  5'- cACG-GCCa---GCCGGuCGGCGGCCaGCg -3'
miRNA:   3'- -UGCgCGGggcgCGGCC-GCUGCCGG-CG- -5'
22646 3' -68 NC_005091.1 + 14015 0.66 0.213593
Target:  5'- cGCGCGCCacauauCCGCcguguacugGUCGGUcGCaGCCGCg -3'
miRNA:   3'- -UGCGCGG------GGCG---------CGGCCGcUGcCGGCG- -5'
22646 3' -68 NC_005091.1 + 31004 0.66 0.212053
Target:  5'- uGCGcCGCCCgUcaguugcacggugaGCGCCGGaucGCGGCCGa -3'
miRNA:   3'- -UGC-GCGGG-G--------------CGCGGCCgc-UGCCGGCg -5'
22646 3' -68 NC_005091.1 + 21299 0.66 0.208499
Target:  5'- aGCGacuuCGCCgCCGCGUacGCGA-GGCCGCc -3'
miRNA:   3'- -UGC----GCGG-GGCGCGgcCGCUgCCGGCG- -5'
22646 3' -68 NC_005091.1 + 50394 0.66 0.208499
Target:  5'- -gGCGauaucaCCUGC-CgGGUGAuCGGCCGCg -3'
miRNA:   3'- ugCGCg-----GGGCGcGgCCGCU-GCCGGCG- -5'
22646 3' -68 NC_005091.1 + 25788 0.66 0.208499
Target:  5'- cCGCGUCUgguucgucguUGCGCCGGCugccuUGGCCGa -3'
miRNA:   3'- uGCGCGGG----------GCGCGGCCGcu---GCCGGCg -5'
22646 3' -68 NC_005091.1 + 10350 0.66 0.207996
Target:  5'- cGCGUGUCgCGCGCCcgacaucgaggacGGCG-CGGauaCCGCc -3'
miRNA:   3'- -UGCGCGGgGCGCGG-------------CCGCuGCC---GGCG- -5'
22646 3' -68 NC_005091.1 + 4409 0.66 0.203511
Target:  5'- gGCaCGCCCa--GCCGGgaaacaggaagaCGACGGCCGg -3'
miRNA:   3'- -UGcGCGGGgcgCGGCC------------GCUGCCGGCg -5'
22646 3' -68 NC_005091.1 + 40957 0.66 0.203511
Target:  5'- cCGCGUCCCGC-CCaGCGcuGCGugcGCUGCg -3'
miRNA:   3'- uGCGCGGGGCGcGGcCGC--UGC---CGGCG- -5'
22646 3' -68 NC_005091.1 + 16027 0.66 0.203511
Target:  5'- aGCGuCGUgCUGcCGCCGGcCGGCGGCa-- -3'
miRNA:   3'- -UGC-GCGgGGC-GCGGCC-GCUGCCGgcg -5'
22646 3' -68 NC_005091.1 + 7190 0.66 0.203511
Target:  5'- nCGCGUuaccUUCGUcuuGCCGGCagcGGCGGCCGUc -3'
miRNA:   3'- uGCGCG----GGGCG---CGGCCG---CUGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 15162 0.66 0.198627
Target:  5'- uUGCGCCCgGa-UCGGgGAcgagacCGGCCGCg -3'
miRNA:   3'- uGCGCGGGgCgcGGCCgCU------GCCGGCG- -5'
22646 3' -68 NC_005091.1 + 41366 0.66 0.198627
Target:  5'- -aGCGCUaCCGCGauGGCaGAUcGCCGCa -3'
miRNA:   3'- ugCGCGG-GGCGCggCCG-CUGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.